RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 Q8N814 137 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 MAPKAPK5-AS1Q8N8E1 139 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 UBE2WQ96B02 151 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 IGHV1-24A0A0C4DH33 117 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 LRCOL1A6NCL2 159 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 ANGP03950 147 aaKnown RBP5.4□□□□□ -1.54
VPS53-214ENST00000572607 SRP19P09132 144 aaKnown RBP5.4□□□□□ -1.54
VPS53-214ENST00000572607 GCSHP23434 173 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 FUSP35637 526 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS53-214ENST00000572607 FAM74A3Q4VXF1 159 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 C15orf54Q8N8G6 183 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 FRZBQ92765 325 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 CNFNQ9BYD5 112 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 NIT2Q9NQR4 276 aa5.4□□□□□ -1.54
VPS53-214ENST00000572607 UBE2L6O14933 153 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 GAGE6Q13070 117 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 PEA15Q15121 130 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 MPV17L2Q567V2 206 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 LINC01551Q86U37 167 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 GTSF1Q8WW33 167 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 PGLYRP4Q96LB8 373 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 C1orf43Q9BWL3 253 aa5.39□□□□□ -1.55
VPS53-214ENST00000572607 LECT2O14960 151 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 COTL1Q14019 142 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 IQCJQ1A5X6 159 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 TMEM241Q24JQ0 296 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 ATRAIDQ6UW56 229 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 TEX261Q6UWH6 196 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 Q8N976 141 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 TSKUQ8WUA8 353 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 BAALCQ8WXS3 180 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 TMEM243Q9BU79 118 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 GFRA4Q9GZZ7 299 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 OSTCQ9NRP0 149 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 PLA2G2DQ9UNK4 145 aa5.38□□□□□ -1.55
VPS53-214ENST00000572607 A0A1B0GUT8 65 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 FAM231BA6NCW3 169 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 AMTP48728 403 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 FOXA3P55318 350 aaPredicted RBP5.37□□□□□ -1.55
VPS53-214ENST00000572607 RBX1P62877 108 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 ADIRFQ15847 76 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 MIAQ16674 131 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 C14orf177Q52M58 125 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 ANKRD39Q53RE8 183 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 NTM-AS1Q6ZSK4 140 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 Q8N1X5 172 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 SMDT1Q9H4I9 107 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 NAT8Q9UHE5 227 aa5.37□□□□□ -1.55
VPS53-214ENST00000572607 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.36□□□□□ -1.55
VPS53-214ENST00000572607 TRAV26-2A0A0B4J265 109 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 HIGD1CA8MV81 97 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 KRTAP10-1P60331 282 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 RAB14P61106 215 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 RIGQ13278 110 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 GATD1Q8NB37 220 aa5.36□□□□□ -1.55
VPS53-214ENST00000572607 DMBT1Q9UGM3 2413 aaPredicted RBP5.35□□□□□ -1.55
VPS53-214ENST00000572607 NCR2O95944 276 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 HLA-DQA1P01909 254 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 APCSP02743 223 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 RPL23P62829 140 aaKnown RBP5.35□□□□□ -1.55
VPS53-214ENST00000572607 WFDC2Q14508 124 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 AMMECR1LQ6DCA0 310 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 CLPSL2Q6UWE3 100 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 ENHOQ6UWT2 76 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 LINC00269Q8N2A0 174 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 ISOC2Q96AB3 205 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 RPL39LQ96EH5 51 aaKnown RBP5.35□□□□□ -1.55
VPS53-214ENST00000572607 TMEM70Q9BUB7 260 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 TMEM191AQ9H0A3 160 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 NAT8BQ9UHF3 227 aa5.35□□□□□ -1.55
VPS53-214ENST00000572607 A0A1B0GUV1 79 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 SDHAF1A6NFY7 115 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 EPM2AB3EWF7 344 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 I3L3M4 83 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 PMCHP20382 165 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 REG3AQ06141 175 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 ST20Q9HBF5 79 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 V9GYV3 84 aa5.34□□□□□ -1.55
VPS53-214ENST00000572607 TRAV8-4A0A0B4J246 113 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 TRBV6-5A0A0K0K1A5 114 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 H7C423 109 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 PPP1R17O96001 155 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 C20orf203Q8NBC4 194 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 NUP35Q8NFH5 326 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 DEFB104AQ8WTQ1 72 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 MRAP2Q96G30 205 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 BTF3L4Q96K17 158 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 PRR34Q9NV39 138 aa5.33□□□□□ -1.56
VPS53-214ENST00000572607 IGLV10-54A0A075B6I4 117 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 A0A1B0GW15 77 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 C9JQL5 133 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 USP17L23D6RBM5 183 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 S100A8P05109 93 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 RAB4AP20338 218 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 XGP55808 180 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 RNASEKQ6P5S7 137 aaKnown RBP5.32□□□□□ -1.56
VPS53-214ENST00000572607 AMN1Q8IY45 258 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 TMEM101Q96IK0 257 aa5.32□□□□□ -1.56
VPS53-214ENST00000572607 IGLV4-60A0A075B6I1 120 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms