RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 WDR73Q6P4I2 378 aa11.62□□□□□ -0.55
CHD3-214ENST00000572579 GTSF1Q8WW33 167 aa11.62□□□□□ -0.55
CHD3-214ENST00000572579 DPH3P1Q9H4G8 78 aa11.62□□□□□ -0.55
CHD3-214ENST00000572579 NIT2Q9NQR4 276 aa11.62□□□□□ -0.55
CHD3-214ENST00000572579 TRAV26-2A0A0B4J265 109 aa11.61□□□□□ -0.55
CHD3-214ENST00000572579 H7C1H1 209 aa11.61□□□□□ -0.55
CHD3-214ENST00000572579 GATD1Q8NB37 220 aa11.61□□□□□ -0.55
CHD3-214ENST00000572579 TMEM243Q9BU79 118 aa11.61□□□□□ -0.55
CHD3-214ENST00000572579 TEX46H3BTG2 121 aa11.6□□□□□ -0.55
CHD3-214ENST00000572579 PGLYRP4Q96LB8 373 aa11.6□□□□□ -0.55
CHD3-214ENST00000572579 XKRY2A2RUG3 117 aa11.59□□□□□ -0.55
CHD3-214ENST00000572579 TRGC1P0CF51 173 aa11.59□□□□□ -0.55
CHD3-214ENST00000572579 Q6ZNX1 250 aa11.59□□□□□ -0.55
CHD3-214ENST00000572579 RPP21Q9H633 154 aaKnown RBP11.59□□□□□ -0.55
CHD3-214ENST00000572579 TWIST1Q15672 202 aa11.58□□□□□ -0.56
CHD3-214ENST00000572579 CNBPP62633 177 aaKnown RBP11.57□□□□□ -0.56
CHD3-214ENST00000572579 RPL39LQ96EH5 51 aaKnown RBP11.57□□□□□ -0.56
CHD3-214ENST00000572579 BIN3Q9NQY0 253 aa11.57□□□□□ -0.56
CHD3-214ENST00000572579 TRAV8-4A0A0B4J246 113 aa11.56□□□□□ -0.56
CHD3-214ENST00000572579 GAS8-AS1O95177 125 aa11.56□□□□□ -0.56
CHD3-214ENST00000572579 CLRN3Q8NCR9 226 aa11.56□□□□□ -0.56
CHD3-214ENST00000572579 CIRBPQ14011 172 aaKnown RBP11.55□□□□□ -0.56
CHD3-214ENST00000572579 LYPD6BQ8NI32 183 aa11.55□□□□□ -0.56
CHD3-214ENST00000572579 UBR4Q5T4S7 5183 aa11.55□□□□□ -0.56
CHD3-214ENST00000572579 hDV102S1A0JD36 115 aa11.54□□□□□ -0.56
CHD3-214ENST00000572579 AMTP48728 403 aa11.54□□□□□ -0.56
CHD3-214ENST00000572579 RPL37AP61513 92 aaKnown RBP11.54□□□□□ -0.56
CHD3-214ENST00000572579 COTL1Q14019 142 aa11.54□□□□□ -0.56
CHD3-214ENST00000572579 OXTP01178 125 aa11.53□□□□□ -0.56
CHD3-214ENST00000572579 CHTF8P0CG12 524 aa11.53□□□□□ -0.56
CHD3-214ENST00000572579 TAGLN2P37802 199 aaKnown RBP11.53□□□□□ -0.56
CHD3-214ENST00000572579 ALKAL2Q6UX46 152 aa11.53□□□□□ -0.56
CHD3-214ENST00000572579 C15orf56Q8N910 161 aa11.53□□□□□ -0.56
CHD3-214ENST00000572579 FAM231BA6NCW3 169 aa11.52□□□□□ -0.57
CHD3-214ENST00000572579 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.51□□□□□ -0.57
CHD3-214ENST00000572579 IGKV2-29A2NJV5 120 aaPredicted RBP11.51□□□□□ -0.57
CHD3-214ENST00000572579 GAGE12HA6NDE8 117 aa11.51□□□□□ -0.57
CHD3-214ENST00000572579 IGKV3OR2-268A0A0C4DH90 116 aa11.5□□□□□ -0.57
CHD3-214ENST00000572579 TMEM250H0YL14 139 aa11.5□□□□□ -0.57
CHD3-214ENST00000572579 UBE2L6O14933 153 aa11.5□□□□□ -0.57
CHD3-214ENST00000572579 FAM231DQ6ZW35 169 aa11.5□□□□□ -0.57
CHD3-214ENST00000572579 TNXBP22105 4242 aa11.49□□□□□ -0.57
CHD3-214ENST00000572579 GATCO43716 136 aaKnown RBP11.49□□□□□ -0.57
CHD3-214ENST00000572579 A0A087WYN8 130 aa11.48□□□□□ -0.57
CHD3-214ENST00000572579 SDHAF1A6NFY7 115 aa11.48□□□□□ -0.57
CHD3-214ENST00000572579 hCG_2014768A0A024R1R8 64 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 IGHV3-64A0A075B6Q5 118 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 MT1HL1P0DM35 61 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 FGF6P10767 208 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 BLOC1S1P78537 153 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 AKAP14Q86UN6 197 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 SPACA4Q8TDM5 124 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 CHCHD10Q8WYQ3 142 aaPredicted RBP11.47□□□□□ -0.57
CHD3-214ENST00000572579 RNF185Q96GF1 192 aa11.47□□□□□ -0.57
CHD3-214ENST00000572579 TRBV6-5A0A0K0K1A5 114 aa11.46□□□□□ -0.57
CHD3-214ENST00000572579 NCR2O95944 276 aa11.46□□□□□ -0.57
CHD3-214ENST00000572579 HIGD2BQ4VC39 106 aa11.46□□□□□ -0.57
CHD3-214ENST00000572579 A8MWL6 223 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 TSHBP01222 138 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 ESDP10768 282 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 RPS10P46783 165 aaKnown RBP11.45□□□□□ -0.58
CHD3-214ENST00000572579 CEBPGP53567 150 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 FOXI1Q12951 378 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 LINC01551Q86U37 167 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 AP5S1Q9NUS5 200 aa11.45□□□□□ -0.58
CHD3-214ENST00000572579 COX6A2Q02221 97 aa11.44□□□□□ -0.58
CHD3-214ENST00000572579 CT83Q5H943 113 aa11.44□□□□□ -0.58
CHD3-214ENST00000572579 RNASEKQ6P5S7 137 aaKnown RBP11.44□□□□□ -0.58
CHD3-214ENST00000572579 PRSS3P2Q8NHM4 247 aa11.44□□□□□ -0.58
CHD3-214ENST00000572579 H7C423 109 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 I3L3M4 83 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 APCSP02743 223 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 SERTAD4-AS1Q5TG53 156 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 AMMECR1LQ6DCA0 310 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 PLAC8Q9NZF1 115 aa11.43□□□□□ -0.58
CHD3-214ENST00000572579 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.42□□□□□ -0.58
CHD3-214ENST00000572579 HIGD1CA8MV81 97 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 SRP19P09132 144 aaKnown RBP11.42□□□□□ -0.58
CHD3-214ENST00000572579 RAB4AP20338 218 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 POLR2KP53803 58 aaKnown RBP11.42□□□□□ -0.58
CHD3-214ENST00000572579 TEX261Q6UWH6 196 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 SMIM15Q7Z3B0 74 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 TSKUQ8WUA8 353 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 TMEM242Q9NWH2 141 aa11.42□□□□□ -0.58
CHD3-214ENST00000572579 GVQW2A0A096LPI5 108 aaPredicted RBP11.41□□□□□ -0.58
CHD3-214ENST00000572579 PMCHP20382 165 aa11.41□□□□□ -0.58
CHD3-214ENST00000572579 CFAP161Q6P656 301 aa11.41□□□□□ -0.58
CHD3-214ENST00000572579 DPH3Q96FX2 82 aa11.41□□□□□ -0.58
CHD3-214ENST00000572579 SMIM7Q9BQ49 75 aa11.41□□□□□ -0.58
CHD3-214ENST00000572579 TMEM191AQ9H0A3 160 aa11.41□□□□□ -0.58
CHD3-214ENST00000572579 LINC00959A0A1B0GUT2 108 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 A0A1B0GUT8 65 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 AMN1Q8IY45 258 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 OR5A1Q8NGJ0 315 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 LINC00526Q96FQ7 95 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 FAM210AQ96ND0 272 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 V9GYV3 84 aa11.4□□□□□ -0.58
CHD3-214ENST00000572579 C9JQL5 133 aa11.39□□□□□ -0.59
CHD3-214ENST00000572579 SMKR1H3BMG3 65 aa11.39□□□□□ -0.59
CHD3-214ENST00000572579 XCL1P47992 114 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms