RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 OR4B1Q8NGF8 309 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 OR5C1Q8NGR4 320 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 SLC50A1Q9BRV3 221 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 KRTAP2-2Q9BYT5 123 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 C11orf1Q9H5F2 150 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 SLC39A9Q9NUM3 307 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 DNAH7Q8WXX0 4024 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 A8MUN3 132 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 H3BMM0 161 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 LST1O00453 97 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 COX7A2LO14548 114 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 BCL2P10415 239 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 HLA-DRB4P13762 266 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 MIFP14174 115 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 MIC13Q5XKP0 118 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 LCN15Q6UWW0 184 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 MGST2Q99735 147 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 SCRT1Q9BWW7 348 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 WDR61Q9GZS3 305 aaKnown RBP4.16□□□□□ -1.74
VPS53-212ENST00000572259 HLA-DRB4X5D2U9 266 aa4.16□□□□□ -1.74
VPS53-212ENST00000572259 TRBV20OR9-2A0A075B6H5 130 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 TRAV9-1A0A075B6T8 112 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 A0A0J9YWU9 116 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 C9JAW5 83 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 SCO1O75880 301 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 S100A8P05109 93 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 NMUP48645 174 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 UBE2AP49459 152 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 HIST1H1AQ02539 215 aaPredicted RBP4.15□□□□□ -1.75
VPS53-212ENST00000572259 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 PATE2Q6UY27 113 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 ORMDL3Q8N138 153 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 C20orf203Q8NBC4 194 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 OR10D4PQ8NGN7 298 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 C14orf144Q96I85 54 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 NPCDR1Q9BY65 106 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 OR5AC2Q9NZP5 309 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 ERG28Q9UKR5 140 aa4.15□□□□□ -1.75
VPS53-212ENST00000572259 KLK5Q9Y337 293 aaPredicted RBP4.15□□□□□ -1.75
VPS53-212ENST00000572259 A0A0J9YX75 114 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 NUPR2A6NF83 97 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 H7C423 109 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 M0R2Z0 102 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 GAS8-AS1O95177 125 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 SEC11BP0C7V7 166 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 TAS2R45P59539 299 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 PDE6HQ13956 83 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 LYRM7Q5U5X0 104 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 TOMM6Q96B49 74 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 RMI2Q96E14 147 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 MRPL32Q9BYC8 188 aaKnown RBP4.14□□□□□ -1.75
VPS53-212ENST00000572259 C11orf68Q9H3H3 251 aaKnown RBP4.14□□□□□ -1.75
VPS53-212ENST00000572259 NAT8BQ9UHF3 227 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 TIMM9Q9Y5J7 89 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 TENM2Q9NT68 2774 aa4.14□□□□□ -1.75
VPS53-212ENST00000572259 TRAV5A0A0B4J249 113 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 C11orf94C9JXX5 98 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 CXorf1O96002 111 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 ZNF705DP0CH99 300 aaPredicted RBP4.13□□□□□ -1.75
VPS53-212ENST00000572259 GDF5OSQ5U4N7 250 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 TCTE3Q8IZS6 198 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 NDFIP1Q9BT67 221 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 SMIM3Q9BZL3 60 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 TMEM14CQ9P0S9 112 aa4.13□□□□□ -1.75
VPS53-212ENST00000572259 MRPS16Q9Y3D3 137 aaKnown RBP4.13□□□□□ -1.75
VPS53-212ENST00000572259 A0A1B0GW54 56 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 INSP01308 110 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 GIG44P09565 113 aaPredicted RBP4.12□□□□□ -1.75
VPS53-212ENST00000572259 SPART-AS1P0CW21 52 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 IGLC2P0DOY2 106 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 CSN1S1P47710 185 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 FXYD7P58549 80 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 SERF2P84101 59 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 RRN3P1Q2M238 152 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 KHDC3LQ587J8 217 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 FAM74A1Q5RGS3 127 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 SCXQ7RTU7 201 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 LYPD1Q8N2G4 141 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 TMEM256Q8N2U0 113 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 RNF182Q8N6D2 247 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 OR2T35Q8NGX2 323 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 SLC35B3Q9H1N7 401 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 RPP21Q9H633 154 aaKnown RBP4.12□□□□□ -1.75
VPS53-212ENST00000572259 C8orf17Q9NRJ1 99 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 FUT9Q9Y231 359 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 NACAE9PAV3 2078 aa4.12□□□□□ -1.75
VPS53-212ENST00000572259 FXYD6-FXYD2A0A087WZ82 144 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 LINC00862A6NCI5 91 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 A8MTW9 85 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 A8MWL6 223 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 DEFB4AO15263 64 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 SRP19P09132 144 aaKnown RBP4.11□□□□□ -1.75
VPS53-212ENST00000572259 S100A2P29034 98 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 DEFB1P60022 68 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 Q1RN00 199 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 SPINK13Q1W4C9 94 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 RASL11AQ6T310 242 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 HRCT1Q6UXD1 115 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 ZNF705AQ6ZN79 300 aaPredicted RBP4.11□□□□□ -1.75
VPS53-212ENST00000572259 C14orf178Q8N769 122 aaPredicted RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms