RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 Q6ZRP5 223 aa12.28□□□□□ -0.44
CCDC40-206ENST00000572083 CHCHD10Q8WYQ3 142 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-206ENST00000572083 MED28Q9H204 178 aa12.28□□□□□ -0.44
CCDC40-206ENST00000572083 A0A1B0GV50 99 aa12.27□□□□□ -0.45
CCDC40-206ENST00000572083 COTL1Q14019 142 aa12.27□□□□□ -0.45
CCDC40-206ENST00000572083 FER1L6-AS1Q8NA97 138 aa12.26□□□□□ -0.45
CCDC40-206ENST00000572083 NIT2Q9NQR4 276 aa12.26□□□□□ -0.45
CCDC40-206ENST00000572083 LINC00474Q9P2X8 69 aa12.26□□□□□ -0.45
CCDC40-206ENST00000572083 PFDN1O60925 122 aa12.25□□□□□ -0.45
CCDC40-206ENST00000572083 GIPP09681 153 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-206ENST00000572083 IGLC6P0CF74 106 aa12.25□□□□□ -0.45
CCDC40-206ENST00000572083 MUC2Q02817 5179 aa12.25□□□□□ -0.45
CCDC40-206ENST00000572083 LINC00526Q96FQ7 95 aa12.24□□□□□ -0.45
CCDC40-206ENST00000572083 CACNG7P62955 275 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 FOXI1Q12951 378 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 AMMECR1LQ6DCA0 310 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 TMUB2Q71RG4 321 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 OR2D3Q8NGH3 330 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 SFT2D1Q8WV19 159 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 CARD19Q96LW7 228 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 CYTL1Q9NRR1 136 aa12.22□□□□□ -0.45
CCDC40-206ENST00000572083 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.21□□□□□ -0.45
CCDC40-206ENST00000572083 IGKV2-29A2NJV5 120 aaPredicted RBP12.21□□□□□ -0.45
CCDC40-206ENST00000572083 RPL35P42766 123 aaKnown RBP12.21□□□□□ -0.45
CCDC40-206ENST00000572083 RNASEKQ6P5S7 137 aaKnown RBP12.21□□□□□ -0.45
CCDC40-206ENST00000572083 FAM231BA6NCW3 169 aa12.2□□□□□ -0.46
CCDC40-206ENST00000572083 TRGC1P0CF51 173 aa12.2□□□□□ -0.46
CCDC40-206ENST00000572083 FAM213BQ8TBF2 198 aa12.2□□□□□ -0.46
CCDC40-206ENST00000572083 PKIGQ9Y2B9 76 aa12.2□□□□□ -0.46
CCDC40-206ENST00000572083 XCL1P47992 114 aa12.19□□□□□ -0.46
CCDC40-206ENST00000572083 Q6ZNX1 250 aa12.19□□□□□ -0.46
CCDC40-206ENST00000572083 NTF3P20783 257 aa12.18□□□□□ -0.46
CCDC40-206ENST00000572083 RPS20P60866 119 aaKnown RBP12.18□□□□□ -0.46
CCDC40-206ENST00000572083 KCNRGQ8N5I3 272 aa12.18□□□□□ -0.46
CCDC40-206ENST00000572083 TRAV26-2A0A0B4J265 109 aa12.17□□□□□ -0.46
CCDC40-206ENST00000572083 ARPC5O15511 151 aa12.17□□□□□ -0.46
CCDC40-206ENST00000572083 CENPWQ5EE01 88 aa12.17□□□□□ -0.46
CCDC40-206ENST00000572083 LYZL1Q6UWQ5 148 aa12.17□□□□□ -0.46
CCDC40-206ENST00000572083 MBD3L1Q8WWY6 194 aa12.17□□□□□ -0.46
CCDC40-206ENST00000572083 G3V3Q6 166 aa12.16□□□□□ -0.46
CCDC40-206ENST00000572083 FGF6P10767 208 aa12.16□□□□□ -0.46
CCDC40-206ENST00000572083 KRTAP9-2Q9BYQ4 174 aa12.16□□□□□ -0.46
CCDC40-206ENST00000572083 IGHV1-58A0A0C4DH39 117 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 C19orf71A6NCJ1 209 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 F2Z2F3 143 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 CCL25O15444 150 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 PTTG1IPP53801 180 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 GATD1Q8NB37 220 aa12.15□□□□□ -0.46
CCDC40-206ENST00000572083 APCSP02743 223 aa12.14□□□□□ -0.47
CCDC40-206ENST00000572083 SYCNQ0VAF6 134 aa12.14□□□□□ -0.47
CCDC40-206ENST00000572083 GAGE2BQ13066 116 aa12.14□□□□□ -0.47
CCDC40-206ENST00000572083 OR5A1Q8NGJ0 315 aa12.14□□□□□ -0.47
CCDC40-206ENST00000572083 RPL39LQ96EH5 51 aaKnown RBP12.14□□□□□ -0.47
CCDC40-206ENST00000572083 PSORS1C2Q9UIG4 136 aa12.14□□□□□ -0.47
CCDC40-206ENST00000572083 XKRY2A2RUG3 117 aa12.13□□□□□ -0.47
CCDC40-206ENST00000572083 ZNF664Q8N3J9 261 aa12.13□□□□□ -0.47
CCDC40-206ENST00000572083 LINC00959A0A1B0GUT2 108 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 A0A1W2PNN7 141 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 H7C423 109 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 ZNF561-AS1K7EIQ3 104 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 IFNA1P01562 189 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 MT-ND6P03923 174 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 PRR26Q8N8Z3 221 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 C11orf52Q96A22 123 aa12.12□□□□□ -0.47
CCDC40-206ENST00000572083 NCR2O95944 276 aa12.11□□□□□ -0.47
CCDC40-206ENST00000572083 LOC107984640A0A0U1RRK4 108 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 UMAD1C9J7I0 102 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 H2AFB1P0C5Y9 115 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 CTRLP40313 264 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 CAMPP49913 170 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 TWIST1Q15672 202 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 C1orf137Q5JT78 98 aa12.1□□□□□ -0.47
CCDC40-206ENST00000572083 RAB19A4D1S5 217 aa12.09□□□□□ -0.47
CCDC40-206ENST00000572083 BCL2P10415 239 aa12.09□□□□□ -0.47
CCDC40-206ENST00000572083 ZNF25P17030 456 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-206ENST00000572083 GNG4P50150 75 aa12.09□□□□□ -0.47
CCDC40-206ENST00000572083 BTF3L4Q96K17 158 aa12.09□□□□□ -0.47
CCDC40-206ENST00000572083 GNG13Q9P2W3 67 aa12.09□□□□□ -0.47
CCDC40-206ENST00000572083 SDHAF1A6NFY7 115 aa12.08□□□□□ -0.48
CCDC40-206ENST00000572083 C9orf62Q8N4C0 152 aa12.08□□□□□ -0.48
CCDC40-206ENST00000572083 TMEM101Q96IK0 257 aa12.08□□□□□ -0.48
CCDC40-206ENST00000572083 CCL20P78556 96 aa12.07□□□□□ -0.48
CCDC40-206ENST00000572083 PHF5AQ7RTV0 110 aaKnown RBP12.07□□□□□ -0.48
CCDC40-206ENST00000572083 MANBALQ9NQG1 85 aa12.07□□□□□ -0.48
CCDC40-206ENST00000572083 IGLV4-69A0A075B6H9 119 aa12.06□□□□□ -0.48
CCDC40-206ENST00000572083 SMLR1H3BR10 107 aa12.06□□□□□ -0.48
CCDC40-206ENST00000572083 SS18Q15532 418 aa12.06□□□□□ -0.48
CCDC40-206ENST00000572083 C9orf116Q5BN46 136 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-206ENST00000572083 TRBV20OR9-2A0A075B6H5 130 aa12.05□□□□□ -0.48
CCDC40-206ENST00000572083 FOXA3P55318 350 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-206ENST00000572083 RPL18AQ02543 176 aaKnown RBP12.05□□□□□ -0.48
CCDC40-206ENST00000572083 CD164L2Q6UWJ8 174 aa12.05□□□□□ -0.48
CCDC40-206ENST00000572083 ISOC2Q96AB3 205 aa12.05□□□□□ -0.48
CCDC40-206ENST00000572083 SMIM12Q96EX1 92 aa12.05□□□□□ -0.48
CCDC40-206ENST00000572083 CNFNQ9BYD5 112 aa12.05□□□□□ -0.48
CCDC40-206ENST00000572083 NUP35Q8NFH5 326 aa12.04□□□□□ -0.48
CCDC40-206ENST00000572083 APOMO95445 188 aa12.03□□□□□ -0.48
CCDC40-206ENST00000572083 PMCHP20382 165 aa12.03□□□□□ -0.48
CCDC40-206ENST00000572083 EIF5AP63241 154 aaKnown RBP12.03□□□□□ -0.48
CCDC40-206ENST00000572083 EIF5AL1Q6IS14 154 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms