RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SFT2D1Q8WV19 159 aa11.9□□□□□ -0.5
NUP88-203ENST00000572019 H7C1H1 209 aa11.89□□□□□ -0.51
NUP88-203ENST00000572019 RPL35P42766 123 aaKnown RBP11.89□□□□□ -0.51
NUP88-203ENST00000572019 SRSF9Q13242 221 aaKnown RBP eCLIP11.89□□□□□ -0.51
NUP88-203ENST00000572019 FAM213BQ8TBF2 198 aa11.89□□□□□ -0.51
NUP88-203ENST00000572019 MBD3L1Q8WWY6 194 aa11.89□□□□□ -0.51
NUP88-203ENST00000572019 LINC00526Q96FQ7 95 aa11.89□□□□□ -0.51
NUP88-203ENST00000572019 PGLYRP4Q96LB8 373 aa11.89□□□□□ -0.51
NUP88-203ENST00000572019 AMTP48728 403 aa11.88□□□□□ -0.51
NUP88-203ENST00000572019 CHCHD10Q8WYQ3 142 aaPredicted RBP11.88□□□□□ -0.51
NUP88-203ENST00000572019 GVQW2A0A096LPI5 108 aaPredicted RBP11.87□□□□□ -0.51
NUP88-203ENST00000572019 SMLR1H3BR10 107 aa11.87□□□□□ -0.51
NUP88-203ENST00000572019 UBE2L6O14933 153 aa11.87□□□□□ -0.51
NUP88-203ENST00000572019 SPINK6Q6UWN8 80 aa11.87□□□□□ -0.51
NUP88-203ENST00000572019 OR2D3Q8NGH3 330 aa11.87□□□□□ -0.51
NUP88-203ENST00000572019 NIT2Q9NQR4 276 aa11.87□□□□□ -0.51
NUP88-203ENST00000572019 CFAP161Q6P656 301 aa11.86□□□□□ -0.51
NUP88-203ENST00000572019 C19orf71A6NCJ1 209 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 PFDN1O60925 122 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 FOXI1Q12951 378 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 COTL1Q14019 142 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 CENPWQ5EE01 88 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 Q6ZNX1 250 aa11.85□□□□□ -0.51
NUP88-203ENST00000572019 TRAV26-2A0A0B4J265 109 aa11.84□□□□□ -0.51
NUP88-203ENST00000572019 CCL20P78556 96 aa11.84□□□□□ -0.51
NUP88-203ENST00000572019 KCNRGQ8N5I3 272 aa11.84□□□□□ -0.51
NUP88-203ENST00000572019 BATF3Q9NR55 127 aa11.84□□□□□ -0.51
NUP88-203ENST00000572019 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.83□□□□□ -0.52
NUP88-203ENST00000572019 IGKV2-29A2NJV5 120 aaPredicted RBP11.83□□□□□ -0.52
NUP88-203ENST00000572019 CACNG7P62955 275 aa11.83□□□□□ -0.52
NUP88-203ENST00000572019 REG3GQ6UW15 175 aa11.83□□□□□ -0.52
NUP88-203ENST00000572019 LYZL1Q6UWQ5 148 aa11.83□□□□□ -0.52
NUP88-203ENST00000572019 RAB19A4D1S5 217 aa11.82□□□□□ -0.52
NUP88-203ENST00000572019 NTF3P20783 257 aa11.82□□□□□ -0.52
NUP88-203ENST00000572019 GATD1Q8NB37 220 aa11.82□□□□□ -0.52
NUP88-203ENST00000572019 C11orf52Q96A22 123 aa11.82□□□□□ -0.52
NUP88-203ENST00000572019 RPL39LQ96EH5 51 aaKnown RBP11.81□□□□□ -0.52
NUP88-203ENST00000572019 TRBV20OR9-2A0A075B6H5 130 aa11.79□□□□□ -0.52
NUP88-203ENST00000572019 TRGC1P0CF51 173 aa11.79□□□□□ -0.52
NUP88-203ENST00000572019 XCL1P47992 114 aa11.79□□□□□ -0.52
NUP88-203ENST00000572019 RPS20P60866 119 aaKnown RBP11.79□□□□□ -0.52
NUP88-203ENST00000572019 RNASEKQ6P5S7 137 aaKnown RBP11.79□□□□□ -0.52
NUP88-203ENST00000572019 Q6ZRP5 223 aa11.79□□□□□ -0.52
NUP88-203ENST00000572019 H2AFB1P0C5Y9 115 aa11.78□□□□□ -0.52
NUP88-203ENST00000572019 FGF6P10767 208 aa11.78□□□□□ -0.52
NUP88-203ENST00000572019 FOXA3P55318 350 aaPredicted RBP11.78□□□□□ -0.52
NUP88-203ENST00000572019 AMMECR1LQ6DCA0 310 aa11.78□□□□□ -0.52
NUP88-203ENST00000572019 GNG13Q9P2W3 67 aa11.78□□□□□ -0.52
NUP88-203ENST00000572019 UMAD1C9J7I0 102 aa11.77□□□□□ -0.53
NUP88-203ENST00000572019 F2Z2F3 143 aa11.77□□□□□ -0.53
NUP88-203ENST00000572019 CTRLP40313 264 aa11.77□□□□□ -0.53
NUP88-203ENST00000572019 CARD19Q96LW7 228 aa11.77□□□□□ -0.53
NUP88-203ENST00000572019 IFNA1P01562 189 aa11.76□□□□□ -0.53
NUP88-203ENST00000572019 C9orf62Q8N4C0 152 aa11.76□□□□□ -0.53
NUP88-203ENST00000572019 A0A1W2PNN7 141 aa11.75□□□□□ -0.53
NUP88-203ENST00000572019 FAM231BA6NCW3 169 aa11.75□□□□□ -0.53
NUP88-203ENST00000572019 CCL25O15444 150 aa11.75□□□□□ -0.53
NUP88-203ENST00000572019 LINC00959A0A1B0GUT2 108 aa11.74□□□□□ -0.53
NUP88-203ENST00000572019 TWIST1Q15672 202 aa11.74□□□□□ -0.53
NUP88-203ENST00000572019 OR5A1Q8NGJ0 315 aa11.74□□□□□ -0.53
NUP88-203ENST00000572019 LINC00474Q9P2X8 69 aa11.74□□□□□ -0.53
NUP88-203ENST00000572019 GNG4P50150 75 aa11.73□□□□□ -0.53
NUP88-203ENST00000572019 PTTG1IPP53801 180 aa11.73□□□□□ -0.53
NUP88-203ENST00000572019 CNFNQ9BYD5 112 aa11.73□□□□□ -0.53
NUP88-203ENST00000572019 IGHV1-58A0A0C4DH39 117 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 APCSP02743 223 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 SYCNQ0VAF6 134 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 GAGE2BQ13066 116 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 ZNF345Q14585 488 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 NUDT10Q8NFP7 164 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 NUDT11Q96G61 164 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 MANBALQ9NQG1 85 aa11.72□□□□□ -0.53
NUP88-203ENST00000572019 NCR2O95944 276 aa11.71□□□□□ -0.53
NUP88-203ENST00000572019 PSORS1C2Q9UIG4 136 aa11.71□□□□□ -0.53
NUP88-203ENST00000572019 XKRY2A2RUG3 117 aa11.7□□□□□ -0.54
NUP88-203ENST00000572019 SDHAF1A6NFY7 115 aa11.7□□□□□ -0.54
NUP88-203ENST00000572019 H7C423 109 aa11.7□□□□□ -0.54
NUP88-203ENST00000572019 BCL2L11O43521 198 aa11.7□□□□□ -0.54
NUP88-203ENST00000572019 BCL2P10415 239 aa11.7□□□□□ -0.54
NUP88-203ENST00000572019 RNASE7Q9H1E1 156 aaKnown RBP11.69□□□□□ -0.54
NUP88-203ENST00000572019 TSHBP01222 138 aa11.68□□□□□ -0.54
NUP88-203ENST00000572019 ESDP10768 282 aa11.68□□□□□ -0.54
NUP88-203ENST00000572019 PRR26Q8N8Z3 221 aa11.68□□□□□ -0.54
NUP88-203ENST00000572019 SMIM12Q96EX1 92 aa11.68□□□□□ -0.54
NUP88-203ENST00000572019 IGLV4-69A0A075B6H9 119 aa11.67□□□□□ -0.54
NUP88-203ENST00000572019 TRAV1-1A0A0B4J248 108 aa11.67□□□□□ -0.54
NUP88-203ENST00000572019 K7EN84 100 aa11.67□□□□□ -0.54
NUP88-203ENST00000572019 ZNF25P17030 456 aaPredicted RBP11.67□□□□□ -0.54
NUP88-203ENST00000572019 CAMPP49913 170 aa11.67□□□□□ -0.54
NUP88-203ENST00000572019 ZNF561-AS1K7EIQ3 104 aa11.66□□□□□ -0.54
NUP88-203ENST00000572019 MEF2BQ02080 365 aaPredicted RBP11.66□□□□□ -0.54
NUP88-203ENST00000572019 C9orf116Q5BN46 136 aaPredicted RBP11.66□□□□□ -0.54
NUP88-203ENST00000572019 PHF5AQ7RTV0 110 aaKnown RBP11.66□□□□□ -0.54
NUP88-203ENST00000572019 KRTAP11-1Q8IUC1 163 aa11.66□□□□□ -0.54
NUP88-203ENST00000572019 RPP21Q9H633 154 aaKnown RBP11.66□□□□□ -0.54
NUP88-203ENST00000572019 MED9Q9NWA0 146 aa11.66□□□□□ -0.54
NUP88-203ENST00000572019 TMEM242Q9NWH2 141 aa11.66□□□□□ -0.54
NUP88-203ENST00000572019 MUC2Q02817 5179 aa11.66□□□□□ -0.54
NUP88-203ENST00000572019 LOC107984640A0A0U1RRK4 108 aa11.65□□□□□ -0.54
NUP88-203ENST00000572019 KANTRA0A1W2PQU2 76 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms