RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 SRRM2Q9UQ35 2752 aaKnown RBP6.36□□□□□ -1.39
CIITA-207ENST00000571545 FLG2Q5D862 2391 aaPredicted RBP6.36□□□□□ -1.39
CIITA-207ENST00000571545 AMTP48728 403 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 NKX2-5P52952 324 aaPredicted RBP6.35□□□□□ -1.39
CIITA-207ENST00000571545 TWIST1Q15672 202 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 AKAP14Q86UN6 197 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 NUDT10Q8NFP7 164 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 BORCS7Q96B45 105 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 NUDT11Q96G61 164 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 FAM210AQ96ND0 272 aa6.35□□□□□ -1.39
CIITA-207ENST00000571545 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.34□□□□□ -1.39
CIITA-207ENST00000571545 NCR2O95944 276 aa6.34□□□□□ -1.39
CIITA-207ENST00000571545 LINC01620Q4KN68 170 aa6.34□□□□□ -1.39
CIITA-207ENST00000571545 CLPSL2Q6UWE3 100 aa6.34□□□□□ -1.39
CIITA-207ENST00000571545 AP5S1Q9NUS5 200 aa6.34□□□□□ -1.39
CIITA-207ENST00000571545 A8MWL6 223 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 H7C423 109 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 NDUFS6O75380 124 aaKnown RBP6.33□□□□□ -1.4
CIITA-207ENST00000571545 CT83Q5H943 113 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 FAM231DQ6ZW35 169 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 C9orf163Q8N9P6 203 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 CIRBP-AS1Q8TBR5 109 aa6.33□□□□□ -1.4
CIITA-207ENST00000571545 hDV102S1A0JD36 115 aa6.32□□□□□ -1.4
CIITA-207ENST00000571545 KRTAP29-1A8MX34 341 aaPredicted RBP6.32□□□□□ -1.4
CIITA-207ENST00000571545 PRSS1P07477 247 aa6.32□□□□□ -1.4
CIITA-207ENST00000571545 CNBPP62633 177 aaKnown RBP6.32□□□□□ -1.4
CIITA-207ENST00000571545 AMMECR1LQ6DCA0 310 aa6.32□□□□□ -1.4
CIITA-207ENST00000571545 CFAP161Q6P656 301 aa6.32□□□□□ -1.4
CIITA-207ENST00000571545 C20orf203Q8NBC4 194 aa6.32□□□□□ -1.4
CIITA-207ENST00000571545 RNASE7Q9H1E1 156 aaKnown RBP6.32□□□□□ -1.4
CIITA-207ENST00000571545 K7EN84 100 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 GATCO43716 136 aaKnown RBP6.31□□□□□ -1.4
CIITA-207ENST00000571545 APCSP02743 223 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 ZNF25P17030 456 aaPredicted RBP6.31□□□□□ -1.4
CIITA-207ENST00000571545 ALKAL2Q6UX46 152 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 Q6ZNX1 250 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 LYPD6BQ8NI32 183 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 OCC1Q8TAD7 63 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 PKIGQ9Y2B9 76 aa6.31□□□□□ -1.4
CIITA-207ENST00000571545 IGLV4-60A0A075B6I1 120 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 IGLV10-54A0A075B6I4 117 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 IGHV3-64A0A075B6Q5 118 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 FAM231BA6NCW3 169 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 RPL37AP61513 92 aaKnown RBP6.3□□□□□ -1.4
CIITA-207ENST00000571545 KRTAP26-1Q6PEX3 210 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 GATD1Q8NB37 220 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 RNF185Q96GF1 192 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 BTF3L4Q96K17 158 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 GFRA4Q9GZZ7 299 aa6.3□□□□□ -1.4
CIITA-207ENST00000571545 OXTP01178 125 aa6.29□□□□□ -1.4
CIITA-207ENST00000571545 FOXA3P55318 350 aaPredicted RBP6.29□□□□□ -1.4
CIITA-207ENST00000571545 TMEM101Q96IK0 257 aa6.29□□□□□ -1.4
CIITA-207ENST00000571545 SMIM7Q9BQ49 75 aa6.29□□□□□ -1.4
CIITA-207ENST00000571545 EIF5A2Q9GZV4 153 aaKnown RBP6.29□□□□□ -1.4
CIITA-207ENST00000571545 VPS13BQ7Z7G8 4022 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 TRAV26-2A0A0B4J265 109 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 TRBV6-5A0A0K0K1A5 114 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 A0A1B0GUT8 65 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 SDHAF1A6NFY7 115 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 I3L3M4 83 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 PPP1R17O96001 155 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 CEBPGP53567 150 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 SMAGPQ0VAQ4 97 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 RNASEKQ6P5S7 137 aaKnown RBP6.28□□□□□ -1.4
CIITA-207ENST00000571545 TSKUQ8WUA8 353 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 GTSF1Q8WW33 167 aa6.28□□□□□ -1.4
CIITA-207ENST00000571545 PMCHP20382 165 aa6.27□□□□□ -1.41
CIITA-207ENST00000571545 CIRBPQ14011 172 aaKnown RBP6.27□□□□□ -1.41
CIITA-207ENST00000571545 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
CIITA-207ENST00000571545 LINC01551Q86U37 167 aa6.27□□□□□ -1.41
CIITA-207ENST00000571545 MRAP2Q96G30 205 aa6.27□□□□□ -1.41
CIITA-207ENST00000571545 TMEM191AQ9H0A3 160 aa6.27□□□□□ -1.41
CIITA-207ENST00000571545 hCG_2014768A0A024R1R8 64 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 GAGE12HA6NDE8 117 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 ZNF727A8MUV8 499 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 HIGD1CA8MV81 97 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 FGF6P10767 208 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 FAM74A3Q4VXF1 159 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 SERTAD4-AS1Q5TG53 156 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 OR5A1Q8NGJ0 315 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 RPL39LQ96EH5 51 aaKnown RBP6.26□□□□□ -1.41
CIITA-207ENST00000571545 ST20Q9HBF5 79 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 OSTCQ9NRP0 149 aa6.26□□□□□ -1.41
CIITA-207ENST00000571545 GVQW2A0A096LPI5 108 aaPredicted RBP6.25□□□□□ -1.41
CIITA-207ENST00000571545 IGKV3OR2-268A0A0C4DH90 116 aa6.25□□□□□ -1.41
CIITA-207ENST00000571545 RPS10P46783 165 aaKnown RBP6.25□□□□□ -1.41
CIITA-207ENST00000571545 KRTAP10-4P60372 401 aaPredicted RBP6.25□□□□□ -1.41
CIITA-207ENST00000571545 RIGQ13278 110 aa6.25□□□□□ -1.41
CIITA-207ENST00000571545 C7orf33Q8WU49 177 aa6.25□□□□□ -1.41
CIITA-207ENST00000571545 CHCHD10Q8WYQ3 142 aaPredicted RBP6.25□□□□□ -1.41
CIITA-207ENST00000571545 DPH3Q96FX2 82 aa6.25□□□□□ -1.41
CIITA-207ENST00000571545 LINC00474Q9P2X8 69 aa6.25□□□□□ -1.41
CIITA-207ENST00000571545 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.25□□□□□ -1.41
CIITA-207ENST00000571545 MYCBP2O75592 4640 aa6.24□□□□□ -1.41
CIITA-207ENST00000571545 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.24□□□□□ -1.41
CIITA-207ENST00000571545 TRBV27A0A0K0K1C4 114 aa6.24□□□□□ -1.41
CIITA-207ENST00000571545 IGKV2-29A2NJV5 120 aaPredicted RBP6.24□□□□□ -1.41
CIITA-207ENST00000571545 C7orf77A4D0Y5 90 aa6.24□□□□□ -1.41
CIITA-207ENST00000571545 PPP1R2P9O14990 202 aa6.24□□□□□ -1.41
CIITA-207ENST00000571545 MRPL52Q86TS9 123 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms