RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 FOXA3P55318 350 aaPredicted RBP5.08□□□□□ -1.6
CDH3-209ENST00000569080 KRTAP10-4P60372 401 aaPredicted RBP5.08□□□□□ -1.6
CDH3-209ENST00000569080 CT83Q5H943 113 aa5.08□□□□□ -1.6
CDH3-209ENST00000569080 LINC01551Q86U37 167 aa5.08□□□□□ -1.6
CDH3-209ENST00000569080 LINC00269Q8N2A0 174 aa5.08□□□□□ -1.6
CDH3-209ENST00000569080 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.08□□□□□ -1.6
CDH3-209ENST00000569080 GATD1Q8NB37 220 aa5.08□□□□□ -1.6
CDH3-209ENST00000569080 A0A1B0GUV1 79 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 HLA-DQA1P01909 254 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 PRSS1P07477 247 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 REG3AQ06141 175 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 TWIST1Q15672 202 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 DEFB104AQ8WTQ1 72 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 RPL39LQ96EH5 51 aaKnown RBP5.07□□□□□ -1.6
CDH3-209ENST00000569080 FAM210AQ96ND0 272 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 TMEM243Q9BU79 118 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 HMCN2Q8NDA2 5059 aa5.07□□□□□ -1.6
CDH3-209ENST00000569080 FAM229AH3BQW9 127 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 GATCO43716 136 aaKnown RBP5.06□□□□□ -1.6
CDH3-209ENST00000569080 GAS8-AS1O95177 125 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 SRP19P09132 144 aaKnown RBP5.06□□□□□ -1.6
CDH3-209ENST00000569080 C14orf177Q52M58 125 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 LINC00528Q8N1L1 170 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 SMIM7Q9BQ49 75 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 CHAC1Q9BUX1 264 aa5.06□□□□□ -1.6
CDH3-209ENST00000569080 IGLV10-54A0A075B6I4 117 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 A8MWL6 223 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 C9JQL5 133 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 AMTP48728 403 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 CEBPGP53567 150 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 COTL1Q14019 142 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 CIRBP-AS1Q8TBR5 109 aa5.05□□□□□ -1.6
CDH3-209ENST00000569080 TRAV8-4A0A0B4J246 113 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 TRBV6-5A0A0K0K1A5 114 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 SDHAF1A6NFY7 115 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 ZNF727A8MUV8 499 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 HIGD1CA8MV81 97 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 PANO1I0J062 215 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 C9orf163Q8N9P6 203 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 TSKUQ8WUA8 353 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 RNF185Q96GF1 192 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 EIF5A2Q9GZV4 153 aaKnown RBP5.04□□□□□ -1.6
CDH3-209ENST00000569080 OSTCQ9NRP0 149 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 V9GYV3 84 aa5.04□□□□□ -1.6
CDH3-209ENST00000569080 A0A1B0GUT8 65 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 FAM231BA6NCW3 169 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 NCR2O95944 276 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 SLPIP03973 132 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 RPS10P46783 165 aaKnown RBP5.03□□□□□ -1.6
CDH3-209ENST00000569080 CNBPP62633 177 aaKnown RBP5.03□□□□□ -1.6
CDH3-209ENST00000569080 DGAT2L7PQ6IED9 249 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 C15orf56Q8N910 161 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 ISOC2Q96AB3 205 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 TMEM191AQ9H0A3 160 aa5.03□□□□□ -1.6
CDH3-209ENST00000569080 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.03□□□□□ -1.6
CDH3-209ENST00000569080 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 IGKV2-29A2NJV5 120 aaPredicted RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 UBE2L6O14933 153 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 TSHBP01222 138 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 APCSP02743 223 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 PLA2G1BP04054 148 aaKnown RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 ESDP10768 282 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 RPL23P62829 140 aaKnown RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 SRSF3P84103 164 aaKnown RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 CIRBPQ14011 172 aaKnown RBP5.02□□□□□ -1.61
CDH3-209ENST00000569080 TEX261Q6UWH6 196 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 SDIM1Q6ZPB5 146 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 SMIM15Q7Z3B0 74 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 AMN1Q8IY45 258 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 NUP35Q8NFH5 326 aa5.02□□□□□ -1.61
CDH3-209ENST00000569080 TRBV27A0A0K0K1C4 114 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 H7C423 109 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 FGF6P10767 208 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 RAB4AP20338 218 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 POLR2KP53803 58 aaKnown RBP5.01□□□□□ -1.61
CDH3-209ENST00000569080 NRACQ8N912 160 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 CLRN3Q8NCR9 226 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 TMEM242Q9NWH2 141 aa5.01□□□□□ -1.61
CDH3-209ENST00000569080 SMIM27A0A1W2PRY6 76 aa5□□□□□ -1.61
CDH3-209ENST00000569080 hDV102S1A0JD36 115 aa5□□□□□ -1.61
CDH3-209ENST00000569080 GAGE12HA6NDE8 117 aa5□□□□□ -1.61
CDH3-209ENST00000569080 I3L3M4 83 aa5□□□□□ -1.61
CDH3-209ENST00000569080 ZNF25P17030 456 aaPredicted RBP5□□□□□ -1.61
CDH3-209ENST00000569080 FAM74A3Q4VXF1 159 aa5□□□□□ -1.61
CDH3-209ENST00000569080 BORCS7Q96B45 105 aa5□□□□□ -1.61
CDH3-209ENST00000569080 MRAP2Q96G30 205 aa5□□□□□ -1.61
CDH3-209ENST00000569080 KRTAP29-1A8MX34 341 aaPredicted RBP4.99□□□□□ -1.61
CDH3-209ENST00000569080 SMKR1H3BMG3 65 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 FOXI1Q12951 378 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 ADIRFQ15847 76 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 TMEM241Q24JQ0 296 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 AMMECR1LQ6DCA0 310 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 MRPL52Q86TS9 123 aaKnown RBP4.99□□□□□ -1.61
CDH3-209ENST00000569080 CHCHD10Q8WYQ3 142 aaPredicted RBP4.99□□□□□ -1.61
CDH3-209ENST00000569080 ST20Q9HBF5 79 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 NAT8Q9UHE5 227 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 NAT8BQ9UHF3 227 aa4.99□□□□□ -1.61
CDH3-209ENST00000569080 GVQW2A0A096LPI5 108 aaPredicted RBP4.98□□□□□ -1.61
CDH3-209ENST00000569080 IGKV3OR2-268A0A0C4DH90 116 aa4.98□□□□□ -1.61
CDH3-209ENST00000569080 A0A1B0GXF2 115 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms