RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FBXL19-AS1Q494R0 122 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 SPANXN1Q5VSR9 72 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 Q5VV11 94 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 C10orf113Q5VZT2 155 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 ZNF833PQ6ZTB9 187 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 PRNTQ86SH4 94 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 C17orf82Q86X59 251 aaPredicted RBP2.27□□□□□ -2.05
VPS35-208ENST00000568612 KLHL30-AS1Q8NEE0 82 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 CCL4L1Q8NHW4 92 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 TMEM254Q8TBM7 123 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 CYP4F30PQ9H0H9 118 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 TMEM14CQ9P0S9 112 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 ABCA7Q8IZY2 2146 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 IGKV1OR2-108A0A075B7D4 117 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 IGLV9-49A0A0B4J1Y8 123 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 IGKV3D-20A0A0C4DH25 116 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 A0A0J9YXY3 114 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 SOCS3O14543 225 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 IGKV1-16P04430 117 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 SAA1P0DJI8 122 aaPredicted RBP2.26□□□□□ -2.05
VPS35-208ENST00000568612 C15orf32Q32M92 178 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 ASB16-AS1Q495Z4 193 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 C2orf83Q53S99 150 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 CLLU1OSQ5K130 101 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 KRTAP7-1Q8IUC3 87 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 LINC01560Q8TB33 94 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 ITLN2Q8WWU7 325 aaPredicted RBP2.26□□□□□ -2.05
VPS35-208ENST00000568612 PRAC1Q96KF2 57 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 NDUFA12Q9UI09 145 aa2.26□□□□□ -2.05
VPS35-208ENST00000568612 LRRK1Q38SD2 2015 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 PRRC2AP48634 2157 aaKnown RBP2.25□□□□□ -2.05
VPS35-208ENST00000568612 TRAV12-3A0A0B4J271 114 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 A0A0J9YXV3 536 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 NDUFAF8A1L188 74 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 PSPHP1O15172 72 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 STATHP02808 62 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 KRTAP5-9P26371 169 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 NREPQ16612 68 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 C6orf99Q4VX62 202 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 ENHOQ6UWT2 76 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 C2orf66Q6UXQ4 117 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 Q6ZS52 159 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 Q9HAA7 133 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 C14orf132Q9NPU4 83 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 CDC42SE1Q9NRR8 79 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 TMEM14BQ9NUH8 114 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 NACAE9PAV3 2078 aa2.25□□□□□ -2.05
VPS35-208ENST00000568612 IGLV3-12A0A075B6K2 115 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGHV4-4A0A075B6R2 117 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 A0A087WW49 117 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGHV4-61A0A0C4DH41 118 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 A0A0J9YWU9 116 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 A8MU10 97 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 HCG22E2RYF7 251 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 C3orf84H3BNL1 204 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 PSCAO43653 123 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGLV3-19P01714 112 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGHV1-69P01742 117 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGHV3-9P01782 118 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGHV4-59P01825 116 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 PRM2P04554 102 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 CTSGP08311 255 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 CRIP1P50238 77 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 PRR3P79522 188 aaKnown RBP2.24□□□□□ -2.05
VPS35-208ENST00000568612 IGLV3-21P80748 117 aaPredicted RBP2.24□□□□□ -2.05
VPS35-208ENST00000568612 PRCDQ00LT1 54 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 C10orf128Q5T292 105 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 LYPD1Q8N2G4 141 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 ZNRF1Q8ND25 227 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 SPTSSBQ8NFR3 76 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 LIMD2Q9BT23 127 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 UBL5Q9BZL1 73 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 ZNF706Q9Y5V0 76 aaPredicted RBP2.24□□□□□ -2.05
VPS35-208ENST00000568612 ESPL1Q14674 2120 aa2.24□□□□□ -2.05
VPS35-208ENST00000568612 PCNX2A6NKB5 2137 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 ARHGAP32A7KAX9 2087 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 IGLV3-9A0A075B6K5 115 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 IGKV1D-37A0A075B6S9 117 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 A0A087X002 238 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 C10orf142B7Z368 130 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 K7EQG2 157 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 ATP6V0E1O15342 81 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 PPP1R17O96001 155 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 B3GALT5-AS1P59052 145 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 KRTAP10-5P60370 271 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 KIF25-AS1Q9Y6Z4 181 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 KNTC1P50748 2209 aa2.23□□□□□ -2.05
VPS35-208ENST00000568612 INTS1Q8N201 2190 aaKnown RBP2.23□□□□□ -2.05
VPS35-208ENST00000568612 IGLV7-46A0A075B6I9 117 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 TRBV6-8A0A0A6YYG3 113 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 IGHV6-1A0A0B4J1U7 121 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 TRAV10A0A0B4J240 114 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 C12orf77C9JDV5 145 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 JMJD7-PLA2G4BH0Y9G9 81 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 CHKB-CPT1BH3BT56 60 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 TRGV3P03979 118 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 CLPSP04118 112 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 NNATQ16517 81 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms