RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 VCYO14598 125 aa14.84□□□□□ -0.03
CLN3-234ENST00000568472 PHOX2AO14813 284 aa14.84□□□□□ -0.03
CLN3-234ENST00000568472 AMTP48728 403 aa14.84□□□□□ -0.03
CLN3-234ENST00000568472 POLR2KP53803 58 aaKnown RBP14.84□□□□□ -0.03
CLN3-234ENST00000568472 SMKR1H3BMG3 65 aa14.83□□□□□ -0.04
CLN3-234ENST00000568472 SUMO2P61956 95 aaKnown RBP14.83□□□□□ -0.04
CLN3-234ENST00000568472 ORMDL3Q8N138 153 aa14.83□□□□□ -0.04
CLN3-234ENST00000568472 TRAV8-3A0A0A6YYJ7 113 aa14.82□□□□□ -0.04
CLN3-234ENST00000568472 COX19Q49B96 90 aa14.82□□□□□ -0.04
CLN3-234ENST00000568472 PRSS29PA6NIE9 313 aa14.81□□□□□ -0.04
CLN3-234ENST00000568472 D6R8Y8 96 aa14.81□□□□□ -0.04
CLN3-234ENST00000568472 RPL32P62910 135 aaKnown RBP14.81□□□□□ -0.04
CLN3-234ENST00000568472 TMEM136Q6ZRR5 245 aa14.81□□□□□ -0.04
CLN3-234ENST00000568472 SLC7A5P1Q8MH63 180 aa14.81□□□□□ -0.04
CLN3-234ENST00000568472 LAMTOR2Q9Y2Q5 125 aa14.81□□□□□ -0.04
CLN3-234ENST00000568472 H7C423 109 aa14.8□□□□□ -0.04
CLN3-234ENST00000568472 UBE2L6O14933 153 aa14.8□□□□□ -0.04
CLN3-234ENST00000568472 TNFRSF6BO95407 300 aa14.8□□□□□ -0.04
CLN3-234ENST00000568472 APCSP02743 223 aa14.8□□□□□ -0.04
CLN3-234ENST00000568472 KIR2DL4Q99706 377 aa14.8□□□□□ -0.04
CLN3-234ENST00000568472 TCAPO15273 167 aa14.79□□□□□ -0.04
CLN3-234ENST00000568472 GAGE6Q13070 117 aa14.79□□□□□ -0.04
CLN3-234ENST00000568472 ATRAIDQ6UW56 229 aa14.79□□□□□ -0.04
CLN3-234ENST00000568472 Q8N3U1 123 aa14.79□□□□□ -0.04
CLN3-234ENST00000568472 DNAH2Q9P225 4427 aa14.79□□□□□ -0.04
CLN3-234ENST00000568472 DNAH10Q8IVF4 4471 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 A0A1B0GUV1 79 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 MPV17L2Q567V2 206 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 Q6ZRN7 208 aaPredicted RBP14.78□□□□□ -0.04
CLN3-234ENST00000568472 PRELID3AQ96N28 172 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 GNB1LQ9BYB4 327 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 KLK12Q9UKR0 248 aa14.78□□□□□ -0.04
CLN3-234ENST00000568472 TSHBP01222 138 aa14.77□□□□□ -0.05
CLN3-234ENST00000568472 HLA-DQA1P01909 254 aa14.77□□□□□ -0.05
CLN3-234ENST00000568472 RBX1P62877 108 aa14.77□□□□□ -0.05
CLN3-234ENST00000568472 Q0VG73 95 aa14.77□□□□□ -0.05
CLN3-234ENST00000568472 TM2D2Q9BX73 214 aa14.77□□□□□ -0.05
CLN3-234ENST00000568472 FCER1GP30273 86 aa14.76□□□□□ -0.05
CLN3-234ENST00000568472 RMI2Q96E14 147 aa14.76□□□□□ -0.05
CLN3-234ENST00000568472 COX11Q9Y6N1 276 aa14.76□□□□□ -0.05
CLN3-234ENST00000568472 MT-ND6P03923 174 aa14.75□□□□□ -0.05
CLN3-234ENST00000568472 ANGP03950 147 aaKnown RBP14.75□□□□□ -0.05
CLN3-234ENST00000568472 DEFB104AQ8WTQ1 72 aa14.75□□□□□ -0.05
CLN3-234ENST00000568472 Q9HAA7 133 aa14.75□□□□□ -0.05
CLN3-234ENST00000568472 NPYP01303 97 aa14.74□□□□□ -0.05
CLN3-234ENST00000568472 ESDP10768 282 aa14.74□□□□□ -0.05
CLN3-234ENST00000568472 Q8N976 141 aa14.74□□□□□ -0.05
CLN3-234ENST00000568472 SMIM2Q9BVW6 85 aa14.74□□□□□ -0.05
CLN3-234ENST00000568472 PRSS47A8MTI9 375 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 CRPP02741 224 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 TNP2Q05952 138 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 SMAGPQ0VAQ4 97 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 UBE2WQ96B02 151 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 FRAS1Q86XX4 4008 aa14.73□□□□□ -0.05
CLN3-234ENST00000568472 PSCAO43653 123 aa14.72□□□□□ -0.05
CLN3-234ENST00000568472 ZNF25P17030 456 aaPredicted RBP14.72□□□□□ -0.05
CLN3-234ENST00000568472 AMMECR1LQ6DCA0 310 aa14.72□□□□□ -0.05
CLN3-234ENST00000568472 DNAH17Q9UFH2 4485 aa14.71□□□□□ -0.05
CLN3-234ENST00000568472 MAP1LC3AQ9H492 121 aa14.71□□□□□ -0.05
CLN3-234ENST00000568472 PRR34Q9NV39 138 aa14.71□□□□□ -0.05
CLN3-234ENST00000568472 EREGO14944 169 aa14.7□□□□□ -0.06
CLN3-234ENST00000568472 MIAQ16674 131 aa14.7□□□□□ -0.06
CLN3-234ENST00000568472 TMEM18Q96B42 140 aa14.7□□□□□ -0.06
CLN3-234ENST00000568472 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.69□□□□□ -0.06
CLN3-234ENST00000568472 IGKV2-29A2NJV5 120 aaPredicted RBP14.69□□□□□ -0.06
CLN3-234ENST00000568472 FGF6P10767 208 aa14.69□□□□□ -0.06
CLN3-234ENST00000568472 ENHOQ6UWT2 76 aa14.69□□□□□ -0.06
CLN3-234ENST00000568472 LINC00269Q8N2A0 174 aa14.69□□□□□ -0.06
CLN3-234ENST00000568472 TMEM101Q96IK0 257 aa14.69□□□□□ -0.06
CLN3-234ENST00000568472 A0A1B0GVY2 172 aa14.68□□□□□ -0.06
CLN3-234ENST00000568472 RAB5AP20339 215 aa14.68□□□□□ -0.06
CLN3-234ENST00000568472 MRPL52Q86TS9 123 aaKnown RBP14.68□□□□□ -0.06
CLN3-234ENST00000568472 C20orf203Q8NBC4 194 aa14.68□□□□□ -0.06
CLN3-234ENST00000568472 SMCO4Q9NRQ5 59 aa14.68□□□□□ -0.06
CLN3-234ENST00000568472 IGLV4-60A0A075B6I1 120 aa14.67□□□□□ -0.06
CLN3-234ENST00000568472 TGIF2-C20orf24A0A0A6YYL0 155 aa14.67□□□□□ -0.06
CLN3-234ENST00000568472 K7EMI3 77 aa14.67□□□□□ -0.06
CLN3-234ENST00000568472 RNASEKQ6P5S7 137 aaKnown RBP14.67□□□□□ -0.06
CLN3-234ENST00000568472 C1orf43Q9BWL3 253 aa14.67□□□□□ -0.06
CLN3-234ENST00000568472 IGKV2D-24A0A075B6R9 120 aa14.66□□□□□ -0.06
CLN3-234ENST00000568472 TRAV8-4A0A0B4J246 113 aa14.66□□□□□ -0.06
CLN3-234ENST00000568472 REG3AQ06141 175 aa14.66□□□□□ -0.06
CLN3-234ENST00000568472 FAT2Q9NYQ8 4349 aa14.65□□□□□ -0.06
CLN3-234ENST00000568472 FABP9Q0Z7S8 132 aa14.65□□□□□ -0.06
CLN3-234ENST00000568472 Q8N8P6 123 aa14.65□□□□□ -0.06
CLN3-234ENST00000568472 OR5A1Q8NGJ0 315 aa14.65□□□□□ -0.06
CLN3-234ENST00000568472 MRPL18Q9H0U6 180 aaKnown RBP14.65□□□□□ -0.06
CLN3-234ENST00000568472 NXT2Q9NPJ8 142 aaKnown RBP14.65□□□□□ -0.06
CLN3-234ENST00000568472 CSDC2Q9Y534 153 aaKnown RBP14.65□□□□□ -0.06
CLN3-234ENST00000568472 LOC389332A0A1B0GUA5 103 aa14.64□□□□□ -0.07
CLN3-234ENST00000568472 KIAA1644Q3SXP7 199 aa14.64□□□□□ -0.07
CLN3-234ENST00000568472 DGAT2L7PQ6IED9 249 aa14.64□□□□□ -0.07
CLN3-234ENST00000568472 A0A087WTM6 91 aa14.63□□□□□ -0.07
CLN3-234ENST00000568472 YPEL4Q96NS1 127 aa14.63□□□□□ -0.07
CLN3-234ENST00000568472 TIMM21Q9BVV7 248 aa14.63□□□□□ -0.07
CLN3-234ENST00000568472 TRAPPC1Q9Y5R8 145 aa14.63□□□□□ -0.07
CLN3-234ENST00000568472 ALKBH7Q9BT30 221 aaPredicted RBP14.62□□□□□ -0.07
CLN3-234ENST00000568472 LRCOL1A6NCL2 159 aa14.6□□□□□ -0.07
CLN3-234ENST00000568472 G0S2P27469 103 aa14.6□□□□□ -0.07
CLN3-234ENST00000568472 ORMDL2Q53FV1 153 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms