RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NTN5Q8WTR8 489 aaPredicted RBP9.92□□□□□ -0.82
VPS39-210ENST00000568357 FRZBQ92765 325 aa9.92□□□□□ -0.82
VPS39-210ENST00000568357 NAT8Q9UHE5 227 aa9.92□□□□□ -0.82
VPS39-210ENST00000568357 FAT1Q14517 4588 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 GAS8-AS1O95177 125 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 XGP55808 180 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 ADIRFQ15847 76 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 NUP35Q8NFH5 326 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 BORCS7Q96B45 105 aa9.91□□□□□ -0.82
VPS39-210ENST00000568357 LINC00269Q8N2A0 174 aa9.9□□□□□ -0.82
VPS39-210ENST00000568357 TMEM243Q9BU79 118 aa9.9□□□□□ -0.82
VPS39-210ENST00000568357 PRR34Q9NV39 138 aa9.9□□□□□ -0.82
VPS39-210ENST00000568357 CRPP02741 224 aa9.89□□□□□ -0.83
VPS39-210ENST00000568357 RNF185Q96GF1 192 aa9.89□□□□□ -0.83
VPS39-210ENST00000568357 C1orf43Q9BWL3 253 aa9.89□□□□□ -0.83
VPS39-210ENST00000568357 TMEM191AQ9H0A3 160 aa9.89□□□□□ -0.83
VPS39-210ENST00000568357 INAFM2P0DMQ5 153 aa9.88□□□□□ -0.83
VPS39-210ENST00000568357 RAB4AP20338 218 aa9.88□□□□□ -0.83
VPS39-210ENST00000568357 COTL1Q14019 142 aa9.88□□□□□ -0.83
VPS39-210ENST00000568357 CLPSL2Q6UWE3 100 aa9.88□□□□□ -0.83
VPS39-210ENST00000568357 C20orf203Q8NBC4 194 aa9.88□□□□□ -0.83
VPS39-210ENST00000568357 IGLV4-60A0A075B6I1 120 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.87□□□□□ -0.83
VPS39-210ENST00000568357 A0A1B0GUV1 79 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 SDHAF1A6NFY7 115 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 AMTP48728 403 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 MIAQ16674 131 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 NAT8BQ9UHF3 227 aa9.87□□□□□ -0.83
VPS39-210ENST00000568357 SMIM27A0A1W2PRY6 76 aa9.86□□□□□ -0.83
VPS39-210ENST00000568357 EPM2AB3EWF7 344 aa9.86□□□□□ -0.83
VPS39-210ENST00000568357 RPS10P46783 165 aaKnown RBP9.86□□□□□ -0.83
VPS39-210ENST00000568357 RIGQ13278 110 aa9.86□□□□□ -0.83
VPS39-210ENST00000568357 KRTAP26-1Q6PEX3 210 aa9.86□□□□□ -0.83
VPS39-210ENST00000568357 AMN1Q8IY45 258 aa9.86□□□□□ -0.83
VPS39-210ENST00000568357 DNAH8Q96JB1 4490 aa9.85□□□□□ -0.83
VPS39-210ENST00000568357 TRBV6-5A0A0K0K1A5 114 aa9.85□□□□□ -0.83
VPS39-210ENST00000568357 REG3AQ06141 175 aa9.85□□□□□ -0.83
VPS39-210ENST00000568357 FAM30AQ9NZY2 134 aa9.85□□□□□ -0.83
VPS39-210ENST00000568357 UBE2L6O14933 153 aa9.84□□□□□ -0.83
VPS39-210ENST00000568357 RAB14P61106 215 aa9.84□□□□□ -0.83
VPS39-210ENST00000568357 IGLV10-54A0A075B6I4 117 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 SMKR1H3BMG3 65 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 I3L3M4 83 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 NCR2O95944 276 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 PMCHP20382 165 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 HAMPP81172 84 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 LINC01620Q4KN68 170 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 MRAP2Q96G30 205 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 TMEM70Q9BUB7 260 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 ST20Q9HBF5 79 aa9.83□□□□□ -0.84
VPS39-210ENST00000568357 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.82□□□□□ -0.84
VPS39-210ENST00000568357 IGKV2-29A2NJV5 120 aaPredicted RBP9.82□□□□□ -0.84
VPS39-210ENST00000568357 USP17L23D6RBM5 183 aa9.82□□□□□ -0.84
VPS39-210ENST00000568357 HLA-DQA1P01909 254 aa9.82□□□□□ -0.84
VPS39-210ENST00000568357 CAMPP49913 170 aa9.82□□□□□ -0.84
VPS39-210ENST00000568357 POLR2KP53803 58 aaKnown RBP9.82□□□□□ -0.84
VPS39-210ENST00000568357 TSHBP01222 138 aa9.81□□□□□ -0.84
VPS39-210ENST00000568357 APCSP02743 223 aa9.81□□□□□ -0.84
VPS39-210ENST00000568357 IFITM2Q01629 132 aa9.81□□□□□ -0.84
VPS39-210ENST00000568357 FAM104BQ5XKR9 115 aa9.81□□□□□ -0.84
VPS39-210ENST00000568357 VPS13BQ7Z7G8 4022 aa9.81□□□□□ -0.84
VPS39-210ENST00000568357 TRAV8-4A0A0B4J246 113 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 SMR3BP02814 79 aaPredicted RBP9.8□□□□□ -0.84
VPS39-210ENST00000568357 PRSS1P07477 247 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 ESDP10768 282 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 MRPL51Q4U2R6 128 aaKnown RBP9.8□□□□□ -0.84
VPS39-210ENST00000568357 CLLU1Q5K131 121 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 NRACQ8N912 160 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 TMEM242Q9NWH2 141 aa9.8□□□□□ -0.84
VPS39-210ENST00000568357 TRBV27A0A0K0K1C4 114 aa9.79□□□□□ -0.84
VPS39-210ENST00000568357 H7C423 109 aa9.79□□□□□ -0.84
VPS39-210ENST00000568357 FGF6P10767 208 aa9.79□□□□□ -0.84
VPS39-210ENST00000568357 C14orf177Q52M58 125 aa9.79□□□□□ -0.84
VPS39-210ENST00000568357 AMMECR1LQ6DCA0 310 aa9.79□□□□□ -0.84
VPS39-210ENST00000568357 MRPL54Q6P161 138 aaKnown RBP9.79□□□□□ -0.84
VPS39-210ENST00000568357 A0A1B0GW15 77 aa9.78□□□□□ -0.84
VPS39-210ENST00000568357 RNASEKQ6P5S7 137 aaKnown RBP9.78□□□□□ -0.84
VPS39-210ENST00000568357 Q6ZSA8 131 aa9.78□□□□□ -0.84
VPS39-210ENST00000568357 HMCN2Q8NDA2 5059 aa9.78□□□□□ -0.84
VPS39-210ENST00000568357 IGKV3OR2-268A0A0C4DH90 116 aa9.77□□□□□ -0.85
VPS39-210ENST00000568357 A0A1B0GXF2 115 aa9.77□□□□□ -0.85
VPS39-210ENST00000568357 VCYO14598 125 aa9.77□□□□□ -0.85
VPS39-210ENST00000568357 SUMO2P61956 95 aaKnown RBP9.77□□□□□ -0.85
VPS39-210ENST00000568357 FLG2Q5D862 2391 aaPredicted RBP9.77□□□□□ -0.85
VPS39-210ENST00000568357 PPP1R17O96001 155 aa9.76□□□□□ -0.85
VPS39-210ENST00000568357 Q5VSD8 79 aa9.76□□□□□ -0.85
VPS39-210ENST00000568357 LINC00862A6NCI5 91 aa9.75□□□□□ -0.85
VPS39-210ENST00000568357 PPP1R2P9O14990 202 aa9.75□□□□□ -0.85
VPS39-210ENST00000568357 HBBP68871 147 aa9.75□□□□□ -0.85
VPS39-210ENST00000568357 PNRC1Q12796 327 aaPredicted RBP9.75□□□□□ -0.85
VPS39-210ENST00000568357 TRBV24-1A0A075B6N3 115 aa9.74□□□□□ -0.85
VPS39-210ENST00000568357 GAGE12HA6NDE8 117 aa9.74□□□□□ -0.85
VPS39-210ENST00000568357 S100A8P05109 93 aa9.74□□□□□ -0.85
VPS39-210ENST00000568357 ZNF25P17030 456 aaPredicted RBP9.74□□□□□ -0.85
VPS39-210ENST00000568357 CKS2P33552 79 aa9.74□□□□□ -0.85
VPS39-210ENST00000568357 C7orf77A4D0Y5 90 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 F8W036 122 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 TNFRSF6BO95407 300 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 MT-ND4LP03901 98 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 DGAT2L7PQ6IED9 249 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms