RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 LINC01556Q5JQF7 62 aa7.58□□□□□ -1.2
CLN3-224ENST00000566816 KIR2DL4Q99706 377 aa7.58□□□□□ -1.2
CLN3-224ENST00000566816 MRPL18Q9H0U6 180 aaKnown RBP7.58□□□□□ -1.2
CLN3-224ENST00000566816 TRAPPC1Q9Y5R8 145 aa7.58□□□□□ -1.2
CLN3-224ENST00000566816 COLCA2A8K830 154 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 ATP6V1G1O75348 118 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 NPYP01303 97 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 ESDP10768 282 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 FABP9Q0Z7S8 132 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 TTC32Q5I0X7 151 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 NIT1Q86X76 327 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 ALKBH7Q9BT30 221 aaPredicted RBP7.57□□□□□ -1.2
CLN3-224ENST00000566816 SMIM2Q9BVW6 85 aa7.57□□□□□ -1.2
CLN3-224ENST00000566816 A0A1B0GUV1 79 aa7.56□□□□□ -1.2
CLN3-224ENST00000566816 Q6ZR54 194 aa7.56□□□□□ -1.2
CLN3-224ENST00000566816 C10orf126Q8N4M7 172 aa7.56□□□□□ -1.2
CLN3-224ENST00000566816 TMEM243Q9BU79 118 aa7.56□□□□□ -1.2
CLN3-224ENST00000566816 MAP1LC3AQ9H492 121 aa7.56□□□□□ -1.2
CLN3-224ENST00000566816 NXT2Q9NPJ8 142 aaKnown RBP7.56□□□□□ -1.2
CLN3-224ENST00000566816 IGLV2-18A0A075B6J9 118 aa7.55□□□□□ -1.2
CLN3-224ENST00000566816 NBDYA0A0U1RRE5 68 aa7.55□□□□□ -1.2
CLN3-224ENST00000566816 TSHBP01222 138 aa7.55□□□□□ -1.2
CLN3-224ENST00000566816 WFDC10BQ8IUB3 73 aa7.55□□□□□ -1.2
CLN3-224ENST00000566816 Q8N8P6 123 aa7.55□□□□□ -1.2
CLN3-224ENST00000566816 RAB5AP20339 215 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 G0S2P27469 103 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 AMTP48728 403 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 SMAGPQ0VAQ4 97 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 KIAA1644Q3SXP7 199 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 CHCHD5Q9BSY4 110 aa7.54□□□□□ -1.2
CLN3-224ENST00000566816 A0A087WX48 190 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 LINC01546A6NGU7 62 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 IBA57-AS1B1ANH7 110 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 FCER1GP30273 86 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 LAGE3Q14657 143 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 TMEM18Q96B42 140 aa7.53□□□□□ -1.2
CLN3-224ENST00000566816 CSDC2Q9Y534 153 aaKnown RBP7.53□□□□□ -1.2
CLN3-224ENST00000566816 RYR2Q92736 4967 aa7.52□□□□□ -1.2
CLN3-224ENST00000566816 LINC01549A6NIU2 74 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 TMEM262E9PQX1 116 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 UBE2L6O14933 153 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 ZNF25P17030 456 aaPredicted RBP7.52□□□□□ -1.21
CLN3-224ENST00000566816 ORMDL2Q53FV1 153 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 MRPL52Q86TS9 123 aaKnown RBP7.52□□□□□ -1.21
CLN3-224ENST00000566816 C20orf203Q8NBC4 194 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 TIMM21Q9BVV7 248 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 DNAH2Q9P225 4427 aa7.52□□□□□ -1.21
CLN3-224ENST00000566816 SCO1O75880 301 aa7.51□□□□□ -1.21
CLN3-224ENST00000566816 RAB5BP61020 215 aa7.51□□□□□ -1.21
CLN3-224ENST00000566816 RBX1P62877 108 aa7.51□□□□□ -1.21
CLN3-224ENST00000566816 PRSS3P2Q8NHM4 247 aa7.51□□□□□ -1.21
CLN3-224ENST00000566816 HYDINQ4G0P3 5121 aa7.51□□□□□ -1.21
CLN3-224ENST00000566816 TRAV8-3A0A0A6YYJ7 113 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 LOC389332A0A1B0GUA5 103 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 TRGC2P03986 189 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 NPSP0C0P6 89 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 IFI27P40305 119 aaPredicted RBP7.5□□□□□ -1.21
CLN3-224ENST00000566816 GAGE6Q13070 117 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 NFE4Q86UQ8 179 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 C18orf32Q8TCD1 76 aa7.5□□□□□ -1.21
CLN3-224ENST00000566816 FGF6P10767 208 aa7.49□□□□□ -1.21
CLN3-224ENST00000566816 Q0VG73 95 aa7.49□□□□□ -1.21
CLN3-224ENST00000566816 MPV17L2Q567V2 206 aa7.49□□□□□ -1.21
CLN3-224ENST00000566816 PRR34Q9NV39 138 aa7.49□□□□□ -1.21
CLN3-224ENST00000566816 PYGO1Q9Y3Y4 419 aa7.49□□□□□ -1.21
CLN3-224ENST00000566816 IGHV3-30P01768 117 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 IGHV3-33P01772 117 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 LINC00614P0C842 121 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 IGHV3-30-3P0DP02 117 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 IGHV3-30-5P0DP03 117 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 C1orf134Q5TEV5 83 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 AMMECR1LQ6DCA0 310 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 C6orf223Q8N319 242 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 TMEM101Q96IK0 257 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 KRTAP1-5Q9BYS1 174 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 SPANXA1Q9NS26 97 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 COX11Q9Y6N1 276 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 DNAH10Q8IVF4 4471 aa7.48□□□□□ -1.21
CLN3-224ENST00000566816 RYR3Q15413 4870 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 DNAH17Q9UFH2 4485 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.47□□□□□ -1.21
CLN3-224ENST00000566816 TRAV8-4A0A0B4J246 113 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 IGKV2-29A2NJV5 120 aaPredicted RBP7.47□□□□□ -1.21
CLN3-224ENST00000566816 M0R2N4 97 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 CCL25O15444 150 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 MRPS36P82909 103 aaKnown RBP7.47□□□□□ -1.21
CLN3-224ENST00000566816 MIAQ16674 131 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 FA2HQ7L5A8 372 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 Q8N976 141 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 DEFB104AQ8WTQ1 72 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 CDC42SE2Q9NRR3 84 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 AP5S1Q9NUS5 200 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 KLK12Q9UKR0 248 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 UBE2D4Q9Y2X8 147 aa7.47□□□□□ -1.21
CLN3-224ENST00000566816 IGLV4-60A0A075B6I1 120 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 ANGP03950 147 aaKnown RBP7.46□□□□□ -1.22
CLN3-224ENST00000566816 DGAT2L7PQ6IED9 249 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 Q8N3U1 123 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 OR5A1Q8NGJ0 315 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 CHCHD1Q96BP2 118 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms