RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 TRBV20-1A0A075B6N2 111 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 TRGV1A0A0A0MS02 117 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 G3V4G9 280 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 H7C423 109 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 J3QR89 54 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 SAP30O75446 220 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 TSPAN13O95857 204 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 RNF151Q2KHN1 245 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 Q6ZUT4 128 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 C10orf126Q8N4M7 172 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 ATP6V0E2Q8NHE4 81 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 DEFB104AQ8WTQ1 72 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 VPS25Q9BRG1 176 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 SPANXDQ9BXN6 97 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 SPANXCQ9NY87 97 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 LRBAP50851 2863 aa4.5□□□□□ -1.69
CLN3-223ENST00000566472 USP9XQ93008 2570 aaPredicted RBP4.5□□□□□ -1.69
CLN3-223ENST00000566472 RELNP78509 3460 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 SPTAN1Q13813 2472 aaKnown RBP4.49□□□□□ -1.69
CLN3-223ENST00000566472 A0A0J9YXY3 114 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 ADARB2-AS1A8MUL3 147 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 CFC1BP0CG36 223 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 CFC1P0CG37 223 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 IGHV3-30-3P0DP02 117 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 HERVK_113P63121 156 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 GAGE13Q4V321 117 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 ZFAND6Q6FIF0 208 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 C11orf44Q8N8P7 122 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 RNF183Q96D59 192 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 VSIG2Q96IQ7 327 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 OVOL2Q9BRP0 275 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 GTSF1LQ9H1H1 148 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 GEMIN7Q9H840 131 aaKnown RBP4.49□□□□□ -1.69
CLN3-223ENST00000566472 C19orf73Q9NVV2 129 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 PRO0461Q9UI25 63 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 IGSF10Q6WRI0 2623 aa4.49□□□□□ -1.69
CLN3-223ENST00000566472 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.48□□□□□ -1.69
CLN3-223ENST00000566472 TRBV6-4A0A1B0GX49 114 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 PLAC8L1A1L4L8 177 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 IGKV2-29A2NJV5 120 aaPredicted RBP4.48□□□□□ -1.69
CLN3-223ENST00000566472 APOMO95445 188 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 PRM2P04554 102 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 GIG44P09565 113 aaPredicted RBP4.48□□□□□ -1.69
CLN3-223ENST00000566472 IFITM1P13164 125 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 DGAT2L7PQ6IED9 249 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 SBSPONQ8IVN8 264 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 LITAFQ99732 161 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 PPDPFQ9H3Y8 114 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 PRO1854Q9UHT4 67 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 NDUFA12Q9UI09 145 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 ACACBO00763 2458 aa4.48□□□□□ -1.69
CLN3-223ENST00000566472 USP24Q9UPU5 2620 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 IGHV3OR16-12A0A075B7B8 117 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 IGHV3-38A0A0C4DH36 116 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 IGLV5-39A0A0G2JS06 123 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 A4D1N5 150 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 H3BMG7 143 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 M0QXV9 152 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 NDUFA1O15239 70 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 IGHV3-33P01772 117 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 MIAQ16674 131 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 HIST2H2BCQ6DN03 193 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 CEMP1Q6PRD7 247 aaPredicted RBP4.47□□□□□ -1.69
CLN3-223ENST00000566472 Q6ZTI0 123 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 MUSTN1Q8IVN3 82 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 CSNK1G2-AS1Q8NCQ2 148 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 COPS9Q8WXC6 57 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 ZNF462Q96JM2 2506 aa4.47□□□□□ -1.69
CLN3-223ENST00000566472 UBR5O95071 2799 aaPredicted RBP4.47□□□□□ -1.69
CLN3-223ENST00000566472 CFAP46Q8IYW2 2715 aa4.46□□□□□ -1.69
CLN3-223ENST00000566472 IGHV3-64A0A075B6Q5 118 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 TRAV8-3A0A0A6YYJ7 113 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 LOC107984156A0A0G2JMH3 177 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 TEX48A0A1B0GUV7 120 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 LINC00694P0DN24 101 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 PCP4P48539 62 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 INSL3P51460 131 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 HIST2H2BDQ6DRA6 164 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 ARL17AQ8IVW1 177 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 LINC00482Q8N8I6 264 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 KIR2DL5BQ8NHK3 375 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 TMEM243Q9BU79 118 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 NOP10Q9NPE3 64 aaKnown RBP4.46□□□□□ -1.7
CLN3-223ENST00000566472 Q9UF83 564 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 ERG28Q9UKR5 140 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 SPG11Q96JI7 2443 aa4.46□□□□□ -1.7
CLN3-223ENST00000566472 CSPG4Q6UVK1 2322 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 TRGV2A0A075B6R0 118 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 TRBV30A0A0K0K1B3 111 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 GAGE12JA6NER3 117 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 SMIM9A6NGZ8 99 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 UBE2L6O14933 153 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 PF4P02776 101 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 SPINK8P0C7L1 97 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 RPL35AP18077 110 aaKnown RBP4.45□□□□□ -1.7
CLN3-223ENST00000566472 PSMB2P49721 201 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 HERV-K104P63124 156 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 GAGE4Q13068 117 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 GAGE5Q13069 117 aa4.45□□□□□ -1.7
CLN3-223ENST00000566472 WFDC2Q14508 124 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms