RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MDFICQ9P1T7 246 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 K7EMT4 169 aa9.84□□□□□ -0.83
VPS4A-204ENST00000566354 IGLV1-40P01703 118 aa9.84□□□□□ -0.83
VPS4A-204ENST00000566354 A0A0J9YY99 117 aa9.84□□□□□ -0.83
VPS4A-204ENST00000566354 F5H697 171 aa9.84□□□□□ -0.83
VPS4A-204ENST00000566354 CD7P09564 240 aa9.84□□□□□ -0.83
VPS4A-204ENST00000566354 SETD2Q9BYW2 2564 aaPredicted RBP9.83□□□□□ -0.84
VPS4A-204ENST00000566354 FN1P02751 2386 aaKnown RBP9.83□□□□□ -0.84
VPS4A-204ENST00000566354 TRBV27A0A0K0K1C4 114 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 CYSRT1A8MQ03 144 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 CCDC179H3BU77 68 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 LYRM7Q5U5X0 104 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 CFAP126Q5VTH2 177 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 JPT2Q9H910 190 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 ESM1Q9NQ30 184 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 TRBV6-5A0A0K0K1A5 114 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 SDHAF1A6NFY7 115 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 RPL39P62891 51 aaKnown RBP9.83□□□□□ -0.84
VPS4A-204ENST00000566354 GAGE2BQ13066 116 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 GAGE2EQ4V326 116 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 ZNRF2Q8NHG8 242 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 GAGE2DQ9UEU5 116 aa9.83□□□□□ -0.84
VPS4A-204ENST00000566354 A0A087WWL8 130 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 DNAJC9-AS1A6NH13 148 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 LGALS9O00182 355 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 TTC32Q5I0X7 151 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 DCANP1Q8TF63 244 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 PPDPFLQ8WWR9 84 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 LOC107984156A0A0G2JMH3 177 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 F5H768 121 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 EMP1P54849 157 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 UBE2D3P61077 147 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 UBE2D2P62837 147 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 ZNF876PQ49A33 203 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 NDUFA11Q86Y39 141 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 ARL17AQ8IVW1 177 aa9.82□□□□□ -0.84
VPS4A-204ENST00000566354 TRAV12-3A0A0B4J271 114 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 INSL3P51460 131 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 TMEM170BQ5T4T1 132 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 SLC25A29Q8N8R3 303 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 PSMB2P49721 201 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 ODF3Q96PU9 254 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 ZNF702PQ9H963 129 aa9.81□□□□□ -0.84
VPS4A-204ENST00000566354 INAFM1C9JVW0 142 aa9.8□□□□□ -0.84
VPS4A-204ENST00000566354 SMCPP49901 116 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-204ENST00000566354 MEIG1Q5JSS6 88 aa9.8□□□□□ -0.84
VPS4A-204ENST00000566354 KIR2DL5BQ8NHK3 375 aa9.8□□□□□ -0.84
VPS4A-204ENST00000566354 C9orf85Q96MD7 179 aa9.8□□□□□ -0.84
VPS4A-204ENST00000566354 IGHV3-30P01768 117 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 IGHV3-30-5P0DP03 117 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 CFHR3Q02985 330 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 C10orf99Q6UWK7 81 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 TMEM86BQ8N661 226 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 TRBV20-1A0A075B6N2 111 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 IGHV3-16A0A0C4DH30 117 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 NIPBLQ6KC79 2804 aaeCLIP9.79□□□□□ -0.84
VPS4A-204ENST00000566354 DEFB104AQ8WTQ1 72 aa9.79□□□□□ -0.84
VPS4A-204ENST00000566354 J3QQQ9 107 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 TSPEAR-AS2P59090 65 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 RHOHQ15669 191 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 FAM74A4Q5TZK3 123 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 NFE4Q86UQ8 179 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 TEP1Q99973 2627 aaKnown RBP9.78□□□□□ -0.84
VPS4A-204ENST00000566354 M0QY20 66 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 CFC1BP0CG36 223 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 CFC1P0CG37 223 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 LGALS3P17931 250 aaKnown RBP9.78□□□□□ -0.84
VPS4A-204ENST00000566354 EDN2P20800 178 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 MRPL23Q16540 153 aaKnown RBP9.78□□□□□ -0.84
VPS4A-204ENST00000566354 NSUN5P1Q3KNT7 163 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 ZNF580Q9UK33 172 aa9.78□□□□□ -0.84
VPS4A-204ENST00000566354 ZNF256Q9Y2P7 627 aaPredicted RBP9.78□□□□□ -0.84
VPS4A-204ENST00000566354 SFTA2Q6UW10 78 aa9.77□□□□□ -0.85
VPS4A-204ENST00000566354 C10orf126Q8N4M7 172 aa9.77□□□□□ -0.85
VPS4A-204ENST00000566354 AMELXQ99217 191 aa9.77□□□□□ -0.85
VPS4A-204ENST00000566354 SNRPD3P62318 126 aaKnown RBP9.77□□□□□ -0.85
VPS4A-204ENST00000566354 TRPT1Q86TN4 253 aaKnown RBP9.77□□□□□ -0.85
VPS4A-204ENST00000566354 A0A0J9YX75 114 aa9.76□□□□□ -0.85
VPS4A-204ENST00000566354 ZNF56Q15929 161 aa9.76□□□□□ -0.85
VPS4A-204ENST00000566354 PRO1854Q9UHT4 67 aa9.76□□□□□ -0.85
VPS4A-204ENST00000566354 ZNF688P0C7X2 276 aa9.76□□□□□ -0.85
VPS4A-204ENST00000566354 Q8N1Y9 231 aa9.76□□□□□ -0.85
VPS4A-204ENST00000566354 LEPROTO15243 131 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 TCL1BO95988 128 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 PSMB8P28062 276 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 HILS1P60008 231 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 Q6ZSV7 163 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 Q8N2B8 174 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 MAST4O15021 2626 aa9.75□□□□□ -0.85
VPS4A-204ENST00000566354 IGHV1OR15-1A0A075B7D0 117 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 TMEM223A0PJW6 202 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 SNCGO76070 127 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 FAM19A5Q7Z5A7 132 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-204ENST00000566354 TEN1Q86WV5 123 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 LINC01587Q99440 93 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 JMJD1CQ15652 2540 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 TRAV12-2A0A075B6T6 113 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 C9JAW5 83 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 P0DMU3 169 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 FAM231AP0DMU4 169 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms