RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 KRTAP26-1Q6PEX3 210 aa9.64□□□□□ -0.87
CLN3-222ENST00000566083 AP5S1Q9NUS5 200 aa9.64□□□□□ -0.87
CLN3-222ENST00000566083 CTRLP40313 264 aa9.63□□□□□ -0.87
CLN3-222ENST00000566083 KRTAP10-4P60372 401 aaPredicted RBP9.63□□□□□ -0.87
CLN3-222ENST00000566083 RPL37AP61513 92 aaKnown RBP9.63□□□□□ -0.87
CLN3-222ENST00000566083 C20orf203Q8NBC4 194 aa9.63□□□□□ -0.87
CLN3-222ENST00000566083 CNFNQ9BYD5 112 aa9.63□□□□□ -0.87
CLN3-222ENST00000566083 TRBV20OR9-2A0A075B6H5 130 aa9.62□□□□□ -0.87
CLN3-222ENST00000566083 TEX261Q6UWH6 196 aa9.62□□□□□ -0.87
CLN3-222ENST00000566083 SMIM15Q7Z3B0 74 aa9.62□□□□□ -0.87
CLN3-222ENST00000566083 NUDT10Q8NFP7 164 aa9.62□□□□□ -0.87
CLN3-222ENST00000566083 NUDT11Q96G61 164 aa9.62□□□□□ -0.87
CLN3-222ENST00000566083 AMTP48728 403 aa9.61□□□□□ -0.87
CLN3-222ENST00000566083 TWIST1Q15672 202 aa9.61□□□□□ -0.87
CLN3-222ENST00000566083 CFAP161Q6P656 301 aa9.61□□□□□ -0.87
CLN3-222ENST00000566083 SDIM1Q6ZPB5 146 aa9.61□□□□□ -0.87
CLN3-222ENST00000566083 RPP21Q9H633 154 aaKnown RBP9.61□□□□□ -0.87
CLN3-222ENST00000566083 IGLV10-54A0A075B6I4 117 aa9.6□□□□□ -0.87
CLN3-222ENST00000566083 hDV102S1A0JD36 115 aa9.6□□□□□ -0.87
CLN3-222ENST00000566083 NCR2O95944 276 aa9.59□□□□□ -0.87
CLN3-222ENST00000566083 RNF185Q96GF1 192 aa9.59□□□□□ -0.87
CLN3-222ENST00000566083 IGLV4-60A0A075B6I1 120 aa9.58□□□□□ -0.88
CLN3-222ENST00000566083 IGHV3-64A0A075B6Q5 118 aa9.58□□□□□ -0.88
CLN3-222ENST00000566083 H7C423 109 aa9.58□□□□□ -0.88
CLN3-222ENST00000566083 TMEM250H0YL14 139 aa9.57□□□□□ -0.88
CLN3-222ENST00000566083 CIRBPQ14011 172 aaKnown RBP9.57□□□□□ -0.88
CLN3-222ENST00000566083 FAM210AQ96ND0 272 aa9.57□□□□□ -0.88
CLN3-222ENST00000566083 BLOC1S1P78537 153 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 AMMECR1LQ6DCA0 310 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 ALKAL2Q6UX46 152 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 OCC1Q8TAD7 63 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 DPH3Q96FX2 82 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.56□□□□□ -0.88
CLN3-222ENST00000566083 A8MWL6 223 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 GATD1Q8NB37 220 aa9.56□□□□□ -0.88
CLN3-222ENST00000566083 RNASE7Q9H1E1 156 aaKnown RBP9.56□□□□□ -0.88
CLN3-222ENST00000566083 FAM231DQ6ZW35 169 aa9.55□□□□□ -0.88
CLN3-222ENST00000566083 GFRA4Q9GZZ7 299 aa9.55□□□□□ -0.88
CLN3-222ENST00000566083 K7EN84 100 aa9.54□□□□□ -0.88
CLN3-222ENST00000566083 APCSP02743 223 aa9.54□□□□□ -0.88
CLN3-222ENST00000566083 ZNF25P17030 456 aaPredicted RBP9.54□□□□□ -0.88
CLN3-222ENST00000566083 CT83Q5H943 113 aa9.54□□□□□ -0.88
CLN3-222ENST00000566083 BORCS7Q96B45 105 aa9.54□□□□□ -0.88
CLN3-222ENST00000566083 GATCO43716 136 aaKnown RBP9.53□□□□□ -0.88
CLN3-222ENST00000566083 PKIGQ9Y2B9 76 aa9.53□□□□□ -0.88
CLN3-222ENST00000566083 TRAV26-2A0A0B4J265 109 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 GAGE12HA6NDE8 117 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 SDHAF1A6NFY7 115 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 RPS10P46783 165 aaKnown RBP9.52□□□□□ -0.89
CLN3-222ENST00000566083 FOXA3P55318 350 aaPredicted RBP9.52□□□□□ -0.89
CLN3-222ENST00000566083 RNASEKQ6P5S7 137 aaKnown RBP9.52□□□□□ -0.89
CLN3-222ENST00000566083 Q6ZRU5 148 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 GTSF1Q8WW33 167 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 BTF3L4Q96K17 158 aa9.52□□□□□ -0.89
CLN3-222ENST00000566083 I3L3M4 83 aa9.51□□□□□ -0.89
CLN3-222ENST00000566083 NDUFS6O75380 124 aaKnown RBP9.51□□□□□ -0.89
CLN3-222ENST00000566083 CHCHD10Q8WYQ3 142 aaPredicted RBP9.51□□□□□ -0.89
CLN3-222ENST00000566083 TMEM101Q96IK0 257 aa9.51□□□□□ -0.89
CLN3-222ENST00000566083 A0A087WYN8 130 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 IGKV3OR2-268A0A0C4DH90 116 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 TRBV6-5A0A0K0K1A5 114 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 PANO1I0J062 215 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 FGF6P10767 208 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 PMCHP20382 165 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 SPACA4Q8TDM5 124 aa9.5□□□□□ -0.89
CLN3-222ENST00000566083 RPL39LQ96EH5 51 aaKnown RBP9.5□□□□□ -0.89
CLN3-222ENST00000566083 FAM231BA6NCW3 169 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 SLPIP03973 132 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 C15orf56Q8N910 161 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 LYPD6BQ8NI32 183 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 C7orf33Q8WU49 177 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 HMCN2Q8NDA2 5059 aa9.49□□□□□ -0.89
CLN3-222ENST00000566083 OR5A1Q8NGJ0 315 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 ST20Q9HBF5 79 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 PLAC8Q9NZF1 115 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 LRP1Q07954 4544 aaKnown RBP9.48□□□□□ -0.89
CLN3-222ENST00000566083 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.48□□□□□ -0.89
CLN3-222ENST00000566083 GVQW2A0A096LPI5 108 aaPredicted RBP9.48□□□□□ -0.89
CLN3-222ENST00000566083 A0A1B0GUT8 65 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 IGKV2-29A2NJV5 120 aaPredicted RBP9.48□□□□□ -0.89
CLN3-222ENST00000566083 TSKUQ8WUA8 353 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 MRAP2Q96G30 205 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 TMEM191AQ9H0A3 160 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 LINC00474Q9P2X8 69 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 PLA2G2DQ9UNK4 145 aa9.48□□□□□ -0.89
CLN3-222ENST00000566083 PPP1R17O96001 155 aa9.47□□□□□ -0.89
CLN3-222ENST00000566083 COX6A2Q02221 97 aa9.47□□□□□ -0.89
CLN3-222ENST00000566083 SMAGPQ0VAQ4 97 aa9.47□□□□□ -0.89
CLN3-222ENST00000566083 EIF5A2Q9GZV4 153 aaKnown RBP9.47□□□□□ -0.89
CLN3-222ENST00000566083 CHTF8P0CG12 524 aa9.46□□□□□ -0.9
CLN3-222ENST00000566083 HNRNPA3P51991 378 aaKnown RBP9.46□□□□□ -0.9
CLN3-222ENST00000566083 CEBPGP53567 150 aa9.46□□□□□ -0.9
CLN3-222ENST00000566083 CLLU1Q5K131 121 aa9.46□□□□□ -0.9
CLN3-222ENST00000566083 SMIM7Q9BQ49 75 aa9.46□□□□□ -0.9
CLN3-222ENST00000566083 HIGD1CA8MV81 97 aa9.45□□□□□ -0.9
CLN3-222ENST00000566083 ESDP10768 282 aa9.45□□□□□ -0.9
CLN3-222ENST00000566083 SS18Q15532 418 aa9.45□□□□□ -0.9
CLN3-222ENST00000566083 HIGD2BQ4VC39 106 aa9.45□□□□□ -0.9
CLN3-222ENST00000566083 OSTCQ9NRP0 149 aa9.45□□□□□ -0.9
CLN3-222ENST00000566083 IGHV1-58A0A0C4DH39 117 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms