RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MIAQ16674 131 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 Q8N814 137 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 CNEP1R1Q8N9A8 125 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 FGF23Q9GZV9 251 aaPredicted RBP3.46□□□□□ -1.86
VPS35-205ENST00000563984 PRO3102Q9H379 93 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 LINC00574Q9H8X3 128 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 TMEM14BQ9NUH8 114 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 CEP290O15078 2479 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 PLXNB2O15031 1838 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 SOCS3O14543 225 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 DNAL4O96015 105 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 MSMBP08118 114 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 RPL38P63173 70 aaKnown RBP3.45□□□□□ -1.86
VPS35-205ENST00000563984 EGFEM1PQ0D2K5 195 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 Q1RN00 199 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 CASC10Q5T4H9 136 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 Q5VV11 94 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 ZNF525Q8N782 197 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 KLF14Q8TD94 323 aaPredicted RBP3.45□□□□□ -1.86
VPS35-205ENST00000563984 ZNF355PQ9NSJ1 428 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 KIAA0100Q14667 2235 aaKnown RBP3.45□□□□□ -1.86
VPS35-205ENST00000563984 NACAE9PAV3 2078 aa3.45□□□□□ -1.86
VPS35-205ENST00000563984 DSCAMO60469 2012 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 FER1L5A0AVI2 2057 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 EML5Q05BV3 1969 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 BCORQ6W2J9 1755 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 IGHV3-21A0A0B4J1V1 117 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 SRRM5B3KS81 715 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 ARMS2P0C7Q2 107 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 DSCR10P59022 87 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 PRR4Q16378 134 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 C10orf128Q5T292 105 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 TMEM263Q8WUH6 116 aaKnown RBP3.44□□□□□ -1.86
VPS35-205ENST00000563984 CYYR1Q96J86 154 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 SMIM14Q96QK8 99 aa3.44□□□□□ -1.86
VPS35-205ENST00000563984 MKI67P46013 3256 aaKnown RBP3.44□□□□□ -1.86
VPS35-205ENST00000563984 TRBV6-8A0A0A6YYG3 113 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 IGKV3D-7A0A0C4DH55 119 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 C11orf86A6NJI1 115 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 D6R8Y8 96 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 K7EMI3 77 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 IGHV3-13P01766 116 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 MOBPQ13875 183 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 MUSTN1Q8IVN3 82 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 Q8IYB0 196 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 OCR1Q9BZK8 76 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 TIMM8BQ9Y5J9 83 aaPredicted RBP3.43□□□□□ -1.86
VPS35-205ENST00000563984 UNC80Q8N2C7 3258 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 MYOFQ9NZM1 2061 aa3.43□□□□□ -1.86
VPS35-205ENST00000563984 MUC22E2RYF6 1773 aaPredicted RBP3.43□□□□□ -1.86
VPS35-205ENST00000563984 TDRD6O60522 2096 aaKnown RBP3.42□□□□□ -1.86
VPS35-205ENST00000563984 TRAV23DV6A0A075B6W5 121 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 TRAV12-1A0A0B4J245 112 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 A6NED7 52 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 LINC01546A6NGU7 62 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 IGHV3-30P01768 117 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 CRPP02741 224 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 IGHV3-30-5P0DP03 117 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 PRB4P10163 310 aaPredicted RBP3.42□□□□□ -1.86
VPS35-205ENST00000563984 C1orf134Q5TEV5 83 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 RPS27LQ71UM5 84 aaKnown RBP3.42□□□□□ -1.86
VPS35-205ENST00000563984 LYZL2Q7Z4W2 148 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 SNURFQ9Y675 71 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 MYO9BQ13459 2157 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 ATRXP46100 2492 aa3.42□□□□□ -1.86
VPS35-205ENST00000563984 IGLV3-16A0A075B6K0 115 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 A0A087WVE0 104 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 A0A096LNJ9 63 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 IGKV6D-41A0A0C4DH26 115 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 IGHV5-10-1A0A0J9YXX1 117 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 B4DSR2 109 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 KRTAP4-16G5E9R7 235 aaPredicted RBP3.41□□□□□ -1.86
VPS35-205ENST00000563984 PSCAO43653 123 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 TRGV3P03979 118 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 CGB3P0DN86 165 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 CGB7P0DN87 165 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 HMGA1P17096 107 aaKnown RBP3.41□□□□□ -1.86
VPS35-205ENST00000563984 RPL28P46779 137 aaKnown RBP3.41□□□□□ -1.86
VPS35-205ENST00000563984 CMC4P56277 68 aaPredicted RBP3.41□□□□□ -1.86
VPS35-205ENST00000563984 ROMO1P60602 79 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 FXYD3Q14802 87 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 LUZP6Q538Z0 58 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 SPINK14Q6IE38 97 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 LYPD2Q6UXB3 125 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 Q6ZR03 302 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 C20orf203Q8NBC4 194 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 CDC42SE2Q9NRR3 84 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 TMEM167BQ9NRX6 74 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 DEC1Q9P2X7 70 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 ICOSQ9Y6W8 199 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 BRCA2P51587 3418 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 VCANP13611 3396 aa3.41□□□□□ -1.86
VPS35-205ENST00000563984 CACNA1AO00555 2505 aa3.4□□□□□ -1.86
VPS35-205ENST00000563984 IGHV4-30-2A0A087WSY4 118 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 IGHV7-4-1A0A0J9YVY3 117 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 TRBV7-4A0A0J9YYF1 115 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 LOC101927531A0A1B0GV80 90 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 HIGD1CA8MV81 97 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 LY6HO94772 140 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 IGKV1D-33P01593 117 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms