RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 J3QLI3 93 aa13.91□□□□□ -0.18
RAB40C-206ENST00000561781 RPL39P62891 51 aaKnown RBP13.91□□□□□ -0.18
RAB40C-206ENST00000561781 LITAFQ99732 161 aa13.91□□□□□ -0.18
RAB40C-206ENST00000561781 RNF5Q99942 180 aa13.91□□□□□ -0.18
RAB40C-206ENST00000561781 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.9□□□□□ -0.18
RAB40C-206ENST00000561781 SVEP1Q4LDE5 3571 aa13.9□□□□□ -0.18
RAB40C-206ENST00000561781 KRTAP10-9P60411 292 aa13.9□□□□□ -0.18
RAB40C-206ENST00000561781 RNF152Q8N8N0 203 aa13.9□□□□□ -0.18
RAB40C-206ENST00000561781 DEFB104AQ8WTQ1 72 aa13.9□□□□□ -0.18
RAB40C-206ENST00000561781 NBR2O15453 112 aa13.89□□□□□ -0.19
RAB40C-206ENST00000561781 LINC00477Q96M19 166 aa13.89□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV3-66A0A0C4DH42 116 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 VCYO14598 125 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV1-69P01742 117 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 TMEM61Q8N0U2 210 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 PHLDA3Q9Y5J5 127 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 NUP37Q8NFH4 326 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 KAAG1Q9UBP8 84 aa13.88□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV3-64A0A075B6Q5 118 aa13.87□□□□□ -0.19
RAB40C-206ENST00000561781 PRR9Q5T870 116 aa13.87□□□□□ -0.19
RAB40C-206ENST00000561781 ZFAND3Q9H8U3 227 aa13.87□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV4OR15-8A0A075B7B6 117 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 A0A087WW49 117 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 INAFM2P0DMQ5 153 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 S100A4P26447 101 aaKnown RBP13.86□□□□□ -0.19
RAB40C-206ENST00000561781 POLR2KP53803 58 aaKnown RBP13.86□□□□□ -0.19
RAB40C-206ENST00000561781 MIAQ16674 131 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 C9orf47Q6ZRZ4 202 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 CELSR1Q9NYQ6 3014 aa13.86□□□□□ -0.19
RAB40C-206ENST00000561781 BUB3O43684 328 aa13.85□□□□□ -0.19
RAB40C-206ENST00000561781 DAZ2Q13117 558 aaKnown RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 DAZ4Q86SG3 579 aaKnown RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 MRPL53Q96EL3 112 aaKnown RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 DAZ1Q9NQZ3 744 aaKnown RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 DAZ3Q9NR90 486 aaKnown RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 CCDC168Q8NDH2 2452 aa13.85□□□□□ -0.19
RAB40C-206ENST00000561781 TINCRA0A1B0GVN0 87 aa13.85□□□□□ -0.19
RAB40C-206ENST00000561781 LY6LH3BQJ8 138 aa13.85□□□□□ -0.19
RAB40C-206ENST00000561781 NAV2Q8IVL1 2488 aa13.85□□□□□ -0.19
RAB40C-206ENST00000561781 ZNF469Q96JG9 3925 aaPredicted RBP13.85□□□□□ -0.19
RAB40C-206ENST00000561781 E7EQL1 145 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 NDUFC2-KCTD14E9PQ53 114 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 MED14OSP0DP75 135 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 PFN2P35080 140 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 C1orf43Q9BWL3 253 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV3OR16-13A0A075B7E8 117 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 IGHV3-74A0A0B4J1X5 117 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 NDPQ00604 133 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 Q6ZSV7 163 aa13.84□□□□□ -0.19
RAB40C-206ENST00000561781 NSUN5P1Q3KNT7 163 aa13.83□□□□□ -0.2
RAB40C-206ENST00000561781 IGF1P05019 195 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 IGHV3-30-3P0DP02 117 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 TIRAPP58753 221 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 ADAMTSL4-AS1Q5T5F5 129 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 SYNJ2BPP57105 145 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 LENEPQ9Y5L5 61 aa13.82□□□□□ -0.2
RAB40C-206ENST00000561781 COX7A2LO14548 114 aa13.81□□□□□ -0.2
RAB40C-206ENST00000561781 NPBQ8NG41 125 aa13.81□□□□□ -0.2
RAB40C-206ENST00000561781 C10orf105Q8TEF2 133 aa13.81□□□□□ -0.2
RAB40C-206ENST00000561781 AKAP9Q99996 3911 aa13.81□□□□□ -0.2
RAB40C-206ENST00000561781 PDZD2O15018 2839 aa13.81□□□□□ -0.2
RAB40C-206ENST00000561781 ANKRD17O75179 2603 aaKnown RBP13.8□□□□□ -0.2
RAB40C-206ENST00000561781 NDUFC2O95298 119 aa13.8□□□□□ -0.2
RAB40C-206ENST00000561781 FAM222AQ5U5X8 452 aa13.8□□□□□ -0.2
RAB40C-206ENST00000561781 LINC00336Q6ZUF6 198 aa13.8□□□□□ -0.2
RAB40C-206ENST00000561781 NPC2P61916 151 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 TEX15Q9BXT5 2789 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 IGHV3-49A0A0A0MS15 119 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 TRAV21A0A0B4J279 112 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 TRBV27A0A0K0K1C4 114 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 ADARB2-AS1A8MUL3 147 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 BAALC-AS2P0C853 105 aa13.79□□□□□ -0.2
RAB40C-206ENST00000561781 ZNF580Q9UK33 172 aa13.78□□□□□ -0.2
RAB40C-206ENST00000561781 IGHV3OR16-10A0A075B7F0 116 aa13.78□□□□□ -0.2
RAB40C-206ENST00000561781 LY6HO94772 140 aa13.78□□□□□ -0.2
RAB40C-206ENST00000561781 Q6JHZ5 121 aa13.78□□□□□ -0.2
RAB40C-206ENST00000561781 TRAV12-3A0A0B4J271 114 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 A0A0J9YXV3 536 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 CLPSL1A2RUU4 121 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 M0R1W7 72 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 NDUFA12Q9UI09 145 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 WNK2Q9Y3S1 2297 aa13.77□□□□□ -0.21
RAB40C-206ENST00000561781 ARHGAP32A7KAX9 2087 aa13.76□□□□□ -0.21
RAB40C-206ENST00000561781 PRRC2AP48634 2157 aaKnown RBP13.76□□□□□ -0.21
RAB40C-206ENST00000561781 USP17L23D6RBM5 183 aa13.76□□□□□ -0.21
RAB40C-206ENST00000561781 LINC00315P59091 139 aa13.76□□□□□ -0.21
RAB40C-206ENST00000561781 C9orf85Q96MD7 179 aa13.76□□□□□ -0.21
RAB40C-206ENST00000561781 KIF25-AS1Q9Y6Z4 181 aa13.76□□□□□ -0.21
RAB40C-206ENST00000561781 RPL35AP18077 110 aaKnown RBP13.75□□□□□ -0.21
RAB40C-206ENST00000561781 PSMB8P28062 276 aa13.75□□□□□ -0.21
RAB40C-206ENST00000561781 OPRPNQ99935 248 aaPredicted RBP13.75□□□□□ -0.21
RAB40C-206ENST00000561781 CYSRT1A8MQ03 144 aa13.75□□□□□ -0.21
RAB40C-206ENST00000561781 TIMM17BO60830 172 aa13.75□□□□□ -0.21
RAB40C-206ENST00000561781 SUMO4Q6EEV6 95 aa13.75□□□□□ -0.21
RAB40C-206ENST00000561781 IGHV1-58A0A0C4DH39 117 aa13.74□□□□□ -0.21
RAB40C-206ENST00000561781 TRBV6-5A0A0K0K1A5 114 aa13.74□□□□□ -0.21
RAB40C-206ENST00000561781 NXPH4O95158 308 aa13.74□□□□□ -0.21
RAB40C-206ENST00000561781 SEC61GP60059 68 aa13.74□□□□□ -0.21
RAB40C-206ENST00000561781 C15orf32Q32M92 178 aa13.74□□□□□ -0.21
RAB40C-206ENST00000561781 BEAN1Q3B7T3 259 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms