RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CNFNQ9BYD5 112 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 BATF3Q9NR55 127 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 GVQW2A0A096LPI5 108 aaPredicted RBP10.28□□□□□ -0.76
CLN3-208ENST00000561505 HMSDA8MTL9 139 aa10.28□□□□□ -0.76
CLN3-208ENST00000561505 MGPP08493 103 aa10.28□□□□□ -0.76
CLN3-208ENST00000561505 PRR3P79522 188 aaKnown RBP10.28□□□□□ -0.76
CLN3-208ENST00000561505 C9orf62Q8N4C0 152 aa10.28□□□□□ -0.76
CLN3-208ENST00000561505 OR2D3Q8NGH3 330 aa10.28□□□□□ -0.76
CLN3-208ENST00000561505 DPH3P1Q9H4G8 78 aa10.28□□□□□ -0.76
CLN3-208ENST00000561505 A0A0J9YXV3 536 aa10.27□□□□□ -0.77
CLN3-208ENST00000561505 TRGC1P0CF51 173 aa10.27□□□□□ -0.77
CLN3-208ENST00000561505 RAB5CP51148 216 aa10.27□□□□□ -0.77
CLN3-208ENST00000561505 CCL20P78556 96 aa10.27□□□□□ -0.77
CLN3-208ENST00000561505 GAGE12HA6NDE8 117 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 NTF3P20783 257 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 SRSF9Q13242 221 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLN3-208ENST00000561505 COTL1Q14019 142 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 CENPWQ5EE01 88 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 LYZL1Q6UWQ5 148 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 MANBALQ9NQG1 85 aa10.26□□□□□ -0.77
CLN3-208ENST00000561505 A0A1B0GV50 99 aa10.25□□□□□ -0.77
CLN3-208ENST00000561505 CTRLP40313 264 aa10.25□□□□□ -0.77
CLN3-208ENST00000561505 AMTP48728 403 aa10.25□□□□□ -0.77
CLN3-208ENST00000561505 TRBV20OR9-2A0A075B6H5 130 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 XKRY2A2RUG3 117 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 SMLR1H3BR10 107 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 H7C423 109 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 SULT1A2P50226 295 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 TPPP3Q9BW30 176 aa10.24□□□□□ -0.77
CLN3-208ENST00000561505 UBE2L6O14933 153 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 BCL2L11O43521 198 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 NCR2O95944 276 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 MAJINQ3KP22 176 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 SPINK6Q6UWN8 80 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 STPG4Q8N801 248 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 GATD1Q8NB37 220 aa10.23□□□□□ -0.77
CLN3-208ENST00000561505 CHCHD10Q8WYQ3 142 aaPredicted RBP10.23□□□□□ -0.77
CLN3-208ENST00000561505 A0A096LNI7 61 aa10.22□□□□□ -0.77
CLN3-208ENST00000561505 RAB19A4D1S5 217 aa10.22□□□□□ -0.77
CLN3-208ENST00000561505 IFNA1P01562 189 aa10.22□□□□□ -0.77
CLN3-208ENST00000561505 FOXI1Q12951 378 aa10.22□□□□□ -0.77
CLN3-208ENST00000561505 EIF5AP63241 154 aaKnown RBP10.21□□□□□ -0.77
CLN3-208ENST00000561505 ODF1Q14990 250 aa10.21□□□□□ -0.77
CLN3-208ENST00000561505 HIGD2BQ4VC39 106 aa10.21□□□□□ -0.77
CLN3-208ENST00000561505 GTSF1Q8WW33 167 aa10.21□□□□□ -0.77
CLN3-208ENST00000561505 GNG13Q9P2W3 67 aa10.21□□□□□ -0.77
CLN3-208ENST00000561505 LINC00474Q9P2X8 69 aa10.21□□□□□ -0.77
CLN3-208ENST00000561505 GNG4P50150 75 aa10.2□□□□□ -0.78
CLN3-208ENST00000561505 Q6ZNX1 250 aa10.2□□□□□ -0.78
CLN3-208ENST00000561505 NUDT10Q8NFP7 164 aa10.2□□□□□ -0.78
CLN3-208ENST00000561505 NUDT11Q96G61 164 aa10.2□□□□□ -0.78
CLN3-208ENST00000561505 BIN3Q9NQY0 253 aa10.2□□□□□ -0.78
CLN3-208ENST00000561505 IGKV2-24A0A0C4DH68 120 aa10.19□□□□□ -0.78
CLN3-208ENST00000561505 PDE6DO43924 150 aa10.19□□□□□ -0.78
CLN3-208ENST00000561505 MEF2BQ02080 365 aaPredicted RBP10.19□□□□□ -0.78
CLN3-208ENST00000561505 KANTRA0A1W2PQU2 76 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 FAM231BA6NCW3 169 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 FGF6P10767 208 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 ZNF25P17030 456 aaPredicted RBP10.18□□□□□ -0.78
CLN3-208ENST00000561505 REG3GQ6UW15 175 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 OR5A1Q8NGJ0 315 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 FAM210AQ96ND0 272 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 PKIGQ9Y2B9 76 aa10.18□□□□□ -0.78
CLN3-208ENST00000561505 TRBV6-5A0A0K0K1A5 114 aa10.17□□□□□ -0.78
CLN3-208ENST00000561505 RGS21Q2M5E4 152 aa10.17□□□□□ -0.78
CLN3-208ENST00000561505 TRAV26-2A0A0B4J265 109 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 ESDP10768 282 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 TWIST1Q15672 202 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 TEX261Q6UWH6 196 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 Q6ZRP5 223 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 LYPD6BQ8NI32 183 aa10.16□□□□□ -0.78
CLN3-208ENST00000561505 RPL39LQ96EH5 51 aaKnown RBP10.16□□□□□ -0.78
CLN3-208ENST00000561505 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.15□□□□□ -0.78
CLN3-208ENST00000561505 IGHV1-58A0A0C4DH39 117 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 IGKV3OR2-268A0A0C4DH90 116 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 LINC00959A0A1B0GUT2 108 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 IGKV2-29A2NJV5 120 aaPredicted RBP10.15□□□□□ -0.78
CLN3-208ENST00000561505 SDHAF1A6NFY7 115 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 AMMECR1LQ6DCA0 310 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 MED9Q9NWA0 146 aa10.15□□□□□ -0.78
CLN3-208ENST00000561505 APCSP02743 223 aa10.14□□□□□ -0.79
CLN3-208ENST00000561505 TEX46H3BTG2 121 aa10.13□□□□□ -0.79
CLN3-208ENST00000561505 K7EN84 100 aa10.13□□□□□ -0.79
CLN3-208ENST00000561505 RNASEKQ6P5S7 137 aaKnown RBP10.13□□□□□ -0.79
CLN3-208ENST00000561505 MRPL52Q86TS9 123 aaKnown RBP10.13□□□□□ -0.79
CLN3-208ENST00000561505 CARD19Q96LW7 228 aa10.13□□□□□ -0.79
CLN3-208ENST00000561505 RPP21Q9H633 154 aaKnown RBP10.13□□□□□ -0.79
CLN3-208ENST00000561505 I3L3M4 83 aa10.12□□□□□ -0.79
CLN3-208ENST00000561505 CCL25O15444 150 aa10.12□□□□□ -0.79
CLN3-208ENST00000561505 BCL2P10415 239 aa10.12□□□□□ -0.79
CLN3-208ENST00000561505 FOXA3P55318 350 aaPredicted RBP10.12□□□□□ -0.79
CLN3-208ENST00000561505 OCC1Q8TAD7 63 aa10.12□□□□□ -0.79
CLN3-208ENST00000561505 XCL1P47992 114 aa10.11□□□□□ -0.79
CLN3-208ENST00000561505 PTTG1IPP53801 180 aa10.11□□□□□ -0.79
CLN3-208ENST00000561505 EIF5AL1Q6IS14 154 aaKnown RBP10.11□□□□□ -0.79
CLN3-208ENST00000561505 CD164L2Q6UWJ8 174 aa10.11□□□□□ -0.79
CLN3-208ENST00000561505 RNASE7Q9H1E1 156 aaKnown RBP10.11□□□□□ -0.79
CLN3-208ENST00000561505 CDC42SE2Q9NRR3 84 aa10.11□□□□□ -0.79
CLN3-208ENST00000561505 TSHBP01222 138 aa10.1□□□□□ -0.79
CLN3-208ENST00000561505 TAGLN2P37802 199 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 191.6 ms