RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 CASKIN1Q8WXD9 1431 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 ATRQ13535 2644 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 LAMC1P11047 1609 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 BIVM-ERCC5R4GMW8 1640 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 UNC13AQ9UPW8 1703 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 ARFGEF1Q9Y6D6 1849 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 FAM92AA1XBS5 289 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 NDUFA2O43678 99 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 BCE1O60756 84 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 HIST1H1DP16402 221 aaKnown RBP-0.12□□□□□ -2.43
SPG11-222ENST00000560435 SPRR2DP22532 72 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 BTG2P78543 158 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 SMCO1Q147U7 214 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 Q5VSD8 79 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 Q8N8P6 123 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 LSM10Q969L4 123 aaKnown RBP-0.12□□□□□ -2.43
SPG11-222ENST00000560435 AMELXQ99217 191 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 PFDN5Q99471 154 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 SNRNP25Q9BV90 132 aaKnown RBP-0.12□□□□□ -2.43
SPG11-222ENST00000560435 SEC11CQ9BY50 192 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 R4GMQ9 66 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 GRIN2AQ12879 1464 aa-0.12□□□□□ -2.43
SPG11-222ENST00000560435 ZNF609O15014 1411 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 NHSL1Q5SYE7 1610 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 PLXNB2O15031 1838 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 LRP2P98164 4655 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 HSPG2P98160 4391 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 CFTRP13569 1480 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 TRAV13-2A0A0B4J235 113 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 M0R135 149 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 M0R3E3 92 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 SNCGO76070 127 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 PPP1R17O96001 155 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 CFDP00746 253 aaPredicted RBP-0.13□□□□□ -2.43
SPG11-222ENST00000560435 SMIM6P0DI80 62 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 IFITM1P13164 125 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 SPRR1AP35321 89 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 ARPC4P59998 168 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 S100A7L2Q5SY68 101 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 C10orf128Q5T292 105 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 CFAP126Q5VTH2 177 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 C12orf73Q69YU5 71 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 Q6AWC8 147 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 SMIM4Q8WVI0 70 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 LINC00470Q9BZP3 86 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 SCN3BQ9NY72 215 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 PRO0255Q9UI72 69 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 LENEPQ9Y5L5 61 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 PDZD2O15018 2839 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 IFT172Q9UG01 1749 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 MYOM3Q5VTT5 1437 aa-0.13□□□□□ -2.43
SPG11-222ENST00000560435 COL6A3P12111 3177 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 GVINP1Q7Z2Y8 2422 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 BICRAQ9NZM4 1560 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 MRC1P22897 1456 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 PIGBOS1A0A0B4J2F0 54 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 I3L2K1 104 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 K7EP13 123 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 PRM1P04553 51 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 FGF7P21781 194 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 S100A12P80511 92 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 RBM3P98179 157 aaKnown RBP-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SPAG11BQ08648 103 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 DEFB109BQ30KR1 87 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 KRTAP6-1Q3LI64 71 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 Q56UQ5 140 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SPAG11AQ6PDA7 123 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 Q8IZM0 81 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 COPS9Q8WXC6 57 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 AQP10Q96PS8 301 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 PDCD10Q9BUL8 212 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SPANXDQ9BXN6 97 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 NAA60Q9H7X0 242 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SPCS1Q9Y6A9 102 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SERP1Q9Y6X1 66 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 LINC01558Q9Y6Z2 57 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 LRP6O75581 1613 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 SRRM2Q9UQ35 2752 aaKnown RBP-0.14□□□□□ -2.43
SPG11-222ENST00000560435 PPIP5K1Q6PFW1 1433 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 MYCBP2O75592 4640 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 KDM3BQ7LBC6 1761 aa-0.14□□□□□ -2.43
SPG11-222ENST00000560435 PKDREJQ9NTG1 2253 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 DOPEY2Q9Y3R5 2298 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 WNK3Q9BYP7 1800 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 BCL9LQ86UU0 1499 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 LRRC37A2A6NM11 1700 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 TNXBP22105 4242 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 TRBV7-3A0A075B6L6 115 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 TRAV22A0A0B4J277 110 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 LOC100130705A0A1B0GUX0 176 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 GNG7O60262 68 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 HMGN1P05114 100 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 CCDC58Q4VC31 144 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 MEIG1Q5JSS6 88 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 BAGE2Q86Y30 109 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 TTC9CQ8N5M4 171 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 DEFB123Q8N688 67 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.15□□□□□ -2.43
SPG11-222ENST00000560435 ARL11Q969Q4 196 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 PPP3R2Q96LZ3 170 aa-0.15□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms