RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 UBE2L6O14933 153 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 MT1HL1P0DM35 61 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 SULT1A2P50226 295 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 RAB5CP51148 216 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 EIF5AP63241 154 aaKnown RBP5.84□□□□□ -1.47
HDDC3-204ENST00000559834 FER1L6-AS1Q8NA97 138 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 C7orf33Q8WU49 177 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 IGLV4-60A0A075B6I1 120 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 TRGC1P0CF51 173 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 RPL35P42766 123 aaKnown RBP5.83□□□□□ -1.48
HDDC3-204ENST00000559834 SUMO4Q6EEV6 95 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 RASL11AQ6T310 242 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 UQCC3Q6UW78 93 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 OR2D3Q8NGH3 330 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 PGLYRP4Q96LB8 373 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 NIT2Q9NQR4 276 aa5.83□□□□□ -1.48
HDDC3-204ENST00000559834 APOC3P02656 99 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 SLPIP03973 132 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 IGLC6P0CF74 106 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 RPS10P46783 165 aaKnown RBP5.82□□□□□ -1.48
HDDC3-204ENST00000559834 COTL1Q14019 142 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 SPACA4Q8TDM5 124 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 MANBALQ9NQG1 85 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 BIN3Q9NQY0 253 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 PLAC8Q9NZF1 115 aa5.82□□□□□ -1.48
HDDC3-204ENST00000559834 IFNA1P01562 189 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 CHTF8P0CG12 524 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 ADCYAP1P18509 176 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 AMTP48728 403 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 EIF5AL1Q6IS14 154 aaKnown RBP5.81□□□□□ -1.48
HDDC3-204ENST00000559834 GTSF1Q8WW33 167 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 SMIM12Q96EX1 92 aa5.81□□□□□ -1.48
HDDC3-204ENST00000559834 LOC105371267A0A1B0GV96 52 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 TMEM218A2RU14 115 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 C19orf71A6NCJ1 209 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 GAGE12HA6NDE8 117 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 PHOX2AO14813 284 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 NDUFS6O75380 124 aaKnown RBP5.8□□□□□ -1.48
HDDC3-204ENST00000559834 NTF3P20783 257 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 GNG4P50150 75 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 BLOC1S1P78537 153 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 CCL20P78556 96 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 SRSF3P84103 164 aaKnown RBP5.8□□□□□ -1.48
HDDC3-204ENST00000559834 COX6A2Q02221 97 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 MAJINQ3KP22 176 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 CENPWQ5EE01 88 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 AMMECR1LQ6DCA0 310 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 LYZL1Q6UWQ5 148 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 C11orf52Q96A22 123 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 GFRA4Q9GZZ7 299 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 GNG13Q9P2W3 67 aa5.8□□□□□ -1.48
HDDC3-204ENST00000559834 LRP1Q07954 4544 aaKnown RBP5.8□□□□□ -1.48
HDDC3-204ENST00000559834 TRAV1-1A0A0B4J248 108 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 IGKV3OR2-268A0A0C4DH90 116 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 F8W036 122 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 FAM74A3Q4VXF1 159 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 LINC01600Q96MT4 127 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 LINC00474Q9P2X8 69 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 PKIGQ9Y2B9 76 aa5.79□□□□□ -1.48
HDDC3-204ENST00000559834 CARHSP1Q9Y2V2 147 aaKnown RBP5.79□□□□□ -1.48
HDDC3-204ENST00000559834 H7C423 109 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 PDE6DO43924 150 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 NCR2O95944 276 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 TWIST1Q15672 202 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 C10orf91Q5T1B1 145 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 STPG4Q8N801 248 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 C15orf56Q8N910 161 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 PRSS3P2Q8NHM4 247 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 HMCN2Q8NDA2 5059 aa5.78□□□□□ -1.48
HDDC3-204ENST00000559834 IGKV2-24A0A0C4DH68 120 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 HIGD2BQ4VC39 106 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 RNASEKQ6P5S7 137 aaKnown RBP5.77□□□□□ -1.49
HDDC3-204ENST00000559834 SMIM15Q7Z3B0 74 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 SVBPQ8N300 66 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 LYPD6BQ8NI32 183 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 CHCHD10Q8WYQ3 142 aaPredicted RBP5.77□□□□□ -1.49
HDDC3-204ENST00000559834 SEC11CQ9BY50 192 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 UBR4Q5T4S7 5183 aa5.77□□□□□ -1.49
HDDC3-204ENST00000559834 GVQW2A0A096LPI5 108 aaPredicted RBP5.76□□□□□ -1.49
HDDC3-204ENST00000559834 SNAPINO95295 136 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 PRR3P79522 188 aaKnown RBP5.76□□□□□ -1.49
HDDC3-204ENST00000559834 MEF2BQ02080 365 aaPredicted RBP5.76□□□□□ -1.49
HDDC3-204ENST00000559834 REG3GQ6UW15 175 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 SPINK6Q6UWN8 80 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 GATD1Q8NB37 220 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 NUDT10Q8NFP7 164 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 NUDT11Q96G61 164 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 BTF3L4Q96K17 158 aa5.76□□□□□ -1.49
HDDC3-204ENST00000559834 APCSP02743 223 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 FGF6P10767 208 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 ZNF25P17030 456 aaPredicted RBP5.75□□□□□ -1.49
HDDC3-204ENST00000559834 CTRLP40313 264 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 CBLN2Q8IUK8 224 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 TMEM101Q96IK0 257 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 CNFNQ9BYD5 112 aa5.75□□□□□ -1.49
HDDC3-204ENST00000559834 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.74□□□□□ -1.49
HDDC3-204ENST00000559834 TRAV26-2A0A0B4J265 109 aa5.74□□□□□ -1.49
HDDC3-204ENST00000559834 A0A0J9YXV3 536 aa5.74□□□□□ -1.49
HDDC3-204ENST00000559834 IGKV2-29A2NJV5 120 aaPredicted RBP5.74□□□□□ -1.49
HDDC3-204ENST00000559834 C9JQL5 133 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms