RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 HIGD1CA8MV81 97 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 CRPP02741 224 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 RPL23P62829 140 aaKnown RBP8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 HAMPP81172 84 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 TMEM241Q24JQ0 296 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 ISOC2Q96AB3 205 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 TMEM243Q9BU79 118 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 C1orf43Q9BWL3 253 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 V9GYV3 84 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 PCLOQ9Y6V0 5065 aa8.22□□□□□ -1.09
PKNOX1-208ENST00000558955 PEA15Q15121 130 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 FAM74A3Q4VXF1 159 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 LINC00269Q8N2A0 174 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 FRZBQ92765 325 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 BORCS7Q96B45 105 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 GFRA4Q9GZZ7 299 aa8.21□□□□□ -1.1
PKNOX1-208ENST00000558955 IGLV4-60A0A075B6I1 120 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 A0A1B0GUT8 65 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 GAS8-AS1O95177 125 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 AMTP48728 403 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 COTL1Q14019 142 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 ADIRFQ15847 76 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 C20orf203Q8NBC4 194 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 PRR34Q9NV39 138 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 FAM30AQ9NZY2 134 aa8.2□□□□□ -1.1
PKNOX1-208ENST00000558955 FAM231BA6NCW3 169 aa8.19□□□□□ -1.1
PKNOX1-208ENST00000558955 MIAQ16674 131 aa8.19□□□□□ -1.1
PKNOX1-208ENST00000558955 LINC01620Q4KN68 170 aa8.19□□□□□ -1.1
PKNOX1-208ENST00000558955 NUP35Q8NFH5 326 aa8.19□□□□□ -1.1
PKNOX1-208ENST00000558955 NAT8Q9UHE5 227 aa8.19□□□□□ -1.1
PKNOX1-208ENST00000558955 HLA-DQA1P01909 254 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 KRTAP26-1Q6PEX3 210 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 RNF185Q96GF1 192 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 TMEM70Q9BUB7 260 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 TMEM191AQ9H0A3 160 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 SMDT1Q9H4I9 107 aa8.18□□□□□ -1.1
PKNOX1-208ENST00000558955 ABCA13Q86UQ4 5058 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 IGLV10-54A0A075B6I4 117 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 A0A1B0GUV1 79 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 SDHAF1A6NFY7 115 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 UBE2L6O14933 153 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 SMR3BP02814 79 aaPredicted RBP8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 RAB4AP20338 218 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 REG3AQ06141 175 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 AMN1Q8IY45 258 aa8.17□□□□□ -1.1
PKNOX1-208ENST00000558955 EPM2AB3EWF7 344 aa8.16□□□□□ -1.1
PKNOX1-208ENST00000558955 USP17L23D6RBM5 183 aa8.16□□□□□ -1.1
PKNOX1-208ENST00000558955 RIGQ13278 110 aa8.16□□□□□ -1.1
PKNOX1-208ENST00000558955 FAT1Q14517 4588 aa8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 TRBV6-5A0A0K0K1A5 114 aa8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 SMIM27A0A1W2PRY6 76 aa8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 IGKV2-29A2NJV5 120 aaPredicted RBP8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 NCR2O95944 276 aa8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 RPS10P46783 165 aaKnown RBP8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 NAT8BQ9UHF3 227 aa8.15□□□□□ -1.1
PKNOX1-208ENST00000558955 DNAH8Q96JB1 4490 aa8.15□□□□□ -1.11
PKNOX1-208ENST00000558955 SMKR1H3BMG3 65 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 I3L3M4 83 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 APCSP02743 223 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 PMCHP20382 165 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 C14orf177Q52M58 125 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 Q5VSD8 79 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 Q6ZSA8 131 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 MRAP2Q96G30 205 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 ST20Q9HBF5 79 aa8.14□□□□□ -1.11
PKNOX1-208ENST00000558955 TRAV8-4A0A0B4J246 113 aa8.13□□□□□ -1.11
PKNOX1-208ENST00000558955 TSHBP01222 138 aa8.13□□□□□ -1.11
PKNOX1-208ENST00000558955 PRSS1P07477 247 aa8.13□□□□□ -1.11
PKNOX1-208ENST00000558955 TMEM242Q9NWH2 141 aa8.13□□□□□ -1.11
PKNOX1-208ENST00000558955 IGKV3OR2-268A0A0C4DH90 116 aa8.12□□□□□ -1.11
PKNOX1-208ENST00000558955 FGF6P10767 208 aa8.12□□□□□ -1.11
PKNOX1-208ENST00000558955 POLR2KP53803 58 aaKnown RBP8.12□□□□□ -1.11
PKNOX1-208ENST00000558955 AMMECR1LQ6DCA0 310 aa8.12□□□□□ -1.11
PKNOX1-208ENST00000558955 RNASEKQ6P5S7 137 aaKnown RBP8.12□□□□□ -1.11
PKNOX1-208ENST00000558955 ESDP10768 282 aa8.11□□□□□ -1.11
PKNOX1-208ENST00000558955 CAMPP49913 170 aa8.11□□□□□ -1.11
PKNOX1-208ENST00000558955 RAB14P61106 215 aa8.11□□□□□ -1.11
PKNOX1-208ENST00000558955 MRPL51Q4U2R6 128 aaKnown RBP8.11□□□□□ -1.11
PKNOX1-208ENST00000558955 NRACQ8N912 160 aa8.11□□□□□ -1.11
PKNOX1-208ENST00000558955 TRBV27A0A0K0K1C4 114 aa8.1□□□□□ -1.11
PKNOX1-208ENST00000558955 H7C423 109 aa8.1□□□□□ -1.11
PKNOX1-208ENST00000558955 FAM104BQ5XKR9 115 aa8.1□□□□□ -1.11
PKNOX1-208ENST00000558955 MRPL54Q6P161 138 aaKnown RBP8.1□□□□□ -1.11
PKNOX1-208ENST00000558955 GAGE12HA6NDE8 117 aa8.09□□□□□ -1.11
PKNOX1-208ENST00000558955 SCXQ7RTU7 201 aa8.09□□□□□ -1.11
PKNOX1-208ENST00000558955 A0A1B0GW15 77 aa8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 A0A1B0GXF2 115 aa8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 FAM229AH3BQW9 127 aa8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 VCYO14598 125 aa8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 ZNF25P17030 456 aaPredicted RBP8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 SUMO2P61956 95 aaKnown RBP8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 DGAT2L7PQ6IED9 249 aa8.08□□□□□ -1.12
PKNOX1-208ENST00000558955 hDV102S1A0JD36 115 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 C7orf77A4D0Y5 90 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 PPP1R17O96001 155 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 INAFM2P0DMQ5 153 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 HBBP68871 147 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 IFITM2Q01629 132 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 CLLU1Q5K131 121 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms