RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 MYH8P13535 1937 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 MGAMO43451 1857 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 CPAMD8Q8IZJ3 1885 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 CASZ1Q86V15 1759 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 COL24A1Q17RW2 1714 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 NWD1Q149M9 1564 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 PXDNQ92626 1479 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 TCRBV4S1A1TA0A5B7 111 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 PRB4P10163 310 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-204ENST00000555934 GNG11P61952 73 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 SEC11AP67812 179 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 CCL8P80075 99 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 MIR22HGQ0VDD5 57 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 ADIRFQ15847 76 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 Q6ZRN7 208 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-204ENST00000555934 Q8TAT8 98 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 MYOZ3Q8TDC0 251 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 MGST2Q99735 147 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 FN1P02751 2386 aaKnown RBP2.03□□□□□ -2.08
LINC00643-204ENST00000555934 ANK1P16157 1881 aa2.03□□□□□ -2.09
LINC00643-204ENST00000555934 DIP2BQ9P265 1576 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 DLG5Q8TDM6 1919 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 TRAV12-1A0A0B4J245 112 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 NAP1L6A6NFF2 107 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 H3BRM9 83 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 PRB1P04280 392 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 CXCL8P10145 99 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 C9orf116Q5BN46 136 aaPredicted RBP2.02□□□□□ -2.09
LINC00643-204ENST00000555934 C2orf82Q6UX34 121 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 SPTSSBQ8NFR3 76 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 PPDPFLQ8WWR9 84 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 ST20Q9HBF5 79 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 LINC00474Q9P2X8 69 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 LHFPL6Q9Y693 200 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 SPCS1Q9Y6A9 102 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 RGPD4Q7Z3J3 1758 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 PEAK1Q9H792 1746 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 FMN2Q9NZ56 1722 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 LRP5O75197 1615 aa2.02□□□□□ -2.09
LINC00643-204ENST00000555934 NFAT5O94916 1531 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 KDM3BQ7LBC6 1761 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 TRAV13-2A0A0B4J235 113 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 TRBV10-3A0A0K0K1G6 114 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 CLECL1Q8IZS7 167 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 SERP2Q8N6R1 65 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 OR10AG1Q8NH19 301 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 S100ZQ8WXG8 99 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 TRGV9Q99603 122 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 CACFD1Q9UGQ2 172 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 LMO7Q8WWI1 1683 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 SCN3AQ9NY46 2000 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 KIAA1549Q9HCM3 1950 aa2.01□□□□□ -2.09
LINC00643-204ENST00000555934 MAP2P11137 1827 aaKnown RBP2.01□□□□□ -2.09
LINC00643-204ENST00000555934 STRCQ7RTU9 1775 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 UBR1Q8IWV7 1749 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 CRYM-AS1A6NIL9 109 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 CCL16O15467 120 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 ZNF833PQ6ZTB9 187 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 COA5Q86WW8 74 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 C9orf163Q8N9P6 203 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 AMELYQ99218 206 aa2□□□□□ -2.09
LINC00643-204ENST00000555934 RGPD3A6NKT7 1758 aaPredicted RBP2□□□□□ -2.09
LINC00643-204ENST00000555934 TNS1Q9HBL0 1735 aaKnown RBP2□□□□□ -2.09
LINC00643-204ENST00000555934 PARP4Q9UKK3 1724 aaKnown RBP2□□□□□ -2.09
LINC00643-204ENST00000555934 ZFHX2Q9C0A1 2572 aaPredicted RBP2□□□□□ -2.09
LINC00643-204ENST00000555934 PLXNA2O75051 1894 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 TRPM7Q96QT4 1865 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 PLXNA4Q9HCM2 1894 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 KIAA1549LQ6ZVL6 1849 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 A0A1W2PPM0 123 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 C2orf70A6NJV1 201 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 HCG22E2RYF7 251 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 SYS1-DBNDD2H3BUS1 97 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 NDUFC1O43677 76 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 IGLC2P0DOY2 106 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 IGLC3P0DOY3 106 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 KRTAP26-1Q6PEX3 210 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-204ENST00000555934 ZNF431Q8TF32 576 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-204ENST00000555934 CYP4F30PQ9H0H9 118 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 NXT2Q9NPJ8 142 aaKnown RBP1.99□□□□□ -2.09
LINC00643-204ENST00000555934 EML5Q05BV3 1969 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 PTPRFP10586 1907 aa1.99□□□□□ -2.09
LINC00643-204ENST00000555934 MUC4Q99102 2169 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 DDX60Q8IY21 1712 aaKnown RBP1.98□□□□□ -2.09
LINC00643-204ENST00000555934 TRGV2A0A075B6R0 118 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 CXorf51AA0A1B0GTR3 108 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 CFDP00746 253 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-204ENST00000555934 TFF1P04155 84 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 MPV17LQ2QL34 196 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 ETDBQ3ZM63 59 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 BVES-AS1Q5T3Y7 98 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 ZNF563Q8TA94 476 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 CDC42SE1Q9NRR8 79 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 C1orf167Q5SNV9 1468 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 PRRC2BQ5JSZ5 2229 aaKnown RBP1.98□□□□□ -2.09
LINC00643-204ENST00000555934 MUC22E2RYF6 1773 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-204ENST00000555934 SIPA1L3O60292 1781 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-204ENST00000555934 LAMB1P07942 1786 aa1.98□□□□□ -2.09
LINC00643-204ENST00000555934 TCHHQ07283 1943 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms