RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SMKR1H3BMG3 65 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 GCSHP23434 173 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 RPS10P46783 165 aaKnown RBP7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 XGP55808 180 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 IFITM2Q01629 132 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 ELOBQ15370 118 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 LINC00269Q8N2A0 174 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 C20orf203Q8NBC4 194 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 BORCS7Q96B45 105 aa7.63□□□□□ -1.19
CCDC88C-208ENST00000554165 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 FAM231BA6NCW3 169 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 NCR2O95944 276 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 RAB4AP20338 218 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 AMTP48728 403 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 COTL1Q14019 142 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 LINC01620Q4KN68 170 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 TMEM191AQ9H0A3 160 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 SMDT1Q9H4I9 107 aa7.62□□□□□ -1.19
CCDC88C-208ENST00000554165 SMIM27A0A1W2PRY6 76 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 SDHAF1A6NFY7 115 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 CRPP02741 224 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 RIGQ13278 110 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 KRTAP26-1Q6PEX3 210 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 RMI2Q96E14 147 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 PRR34Q9NV39 138 aa7.61□□□□□ -1.19
CCDC88C-208ENST00000554165 IGLV10-54A0A075B6I4 117 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 IGKV2-29A2NJV5 120 aaPredicted RBP7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 CAMPP49913 170 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 RAB14P61106 215 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 Q0VG73 95 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 NTN5Q8WTR8 489 aaPredicted RBP7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 FRZBQ92765 325 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 C1orf43Q9BWL3 253 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 FAM30AQ9NZY2 134 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 NAT8BQ9UHF3 227 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 COX11Q9Y6N1 276 aa7.6□□□□□ -1.19
CCDC88C-208ENST00000554165 TRBV6-5A0A0K0K1A5 114 aa7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 TSHBP01222 138 aa7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 PKIAP61925 76 aa7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 REG3AQ06141 175 aa7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 CLLU1Q5K131 121 aa7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 MRPL54Q6P161 138 aaKnown RBP7.59□□□□□ -1.19
CCDC88C-208ENST00000554165 A0A1B0GUV1 79 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 HLA-DQA1P01909 254 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 PMCHP20382 165 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 MIAQ16674 131 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 MRPL51Q4U2R6 128 aaKnown RBP7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 Q8N1X5 172 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 NRACQ8N912 160 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 TMEM70Q9BUB7 260 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 ST20Q9HBF5 79 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 TMEM242Q9NWH2 141 aa7.58□□□□□ -1.2
CCDC88C-208ENST00000554165 DNAH8Q96JB1 4490 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 IGKV3OR2-268A0A0C4DH90 116 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 USP17L23D6RBM5 183 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 I3L3M4 83 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 UBE2L6O14933 153 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 SMR3BP02814 79 aaPredicted RBP7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 POLR2KP53803 58 aaKnown RBP7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 FAM104BQ5XKR9 115 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 MRAP2Q96G30 205 aa7.57□□□□□ -1.2
CCDC88C-208ENST00000554165 A0A1B0GXF2 115 aa7.56□□□□□ -1.2
CCDC88C-208ENST00000554165 APCSP02743 223 aa7.56□□□□□ -1.2
CCDC88C-208ENST00000554165 FGF6P10767 208 aa7.56□□□□□ -1.2
CCDC88C-208ENST00000554165 FAT1Q14517 4588 aa7.56□□□□□ -1.2
CCDC88C-208ENST00000554165 PRSS1P07477 247 aa7.55□□□□□ -1.2
CCDC88C-208ENST00000554165 ESDP10768 282 aa7.55□□□□□ -1.2
CCDC88C-208ENST00000554165 AMMECR1LQ6DCA0 310 aa7.55□□□□□ -1.2
CCDC88C-208ENST00000554165 RNASEKQ6P5S7 137 aaKnown RBP7.55□□□□□ -1.2
CCDC88C-208ENST00000554165 TRBV27A0A0K0K1C4 114 aa7.54□□□□□ -1.2
CCDC88C-208ENST00000554165 ADCYAP1P18509 176 aa7.54□□□□□ -1.2
CCDC88C-208ENST00000554165 HBBP68871 147 aa7.54□□□□□ -1.2
CCDC88C-208ENST00000554165 CKS2P33552 79 aa7.53□□□□□ -1.2
CCDC88C-208ENST00000554165 SUMO2P61956 95 aaKnown RBP7.53□□□□□ -1.2
CCDC88C-208ENST00000554165 A0A1B0GW15 77 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 GAGE12HA6NDE8 117 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 D6R8Y8 96 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 VCYO14598 125 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 PPP1R2P9O14990 202 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 NPYP01303 97 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 Q6ZSA8 131 aa7.52□□□□□ -1.21
CCDC88C-208ENST00000554165 TRAV8-4A0A0B4J246 113 aa7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 TMEM218A2RU14 115 aa7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 H7C423 109 aa7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 TNFRSF6BO95407 300 aa7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 MT-ND4LP03901 98 aa7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 PNRC1Q12796 327 aaPredicted RBP7.51□□□□□ -1.21
CCDC88C-208ENST00000554165 SRRM2Q9UQ35 2752 aaKnown RBP7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 C7orf77A4D0Y5 90 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 EPM2AB3EWF7 344 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 SLPIP03973 132 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 FCER1GP30273 86 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 C14orf177Q52M58 125 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 RNASE13Q5GAN3 156 aaKnown RBP7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 OR5A1Q8NGJ0 315 aa7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 CHCHD10Q8WYQ3 142 aaPredicted RBP7.5□□□□□ -1.21
CCDC88C-208ENST00000554165 TRBV24-1A0A075B6N3 115 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 hDV102S1A0JD36 115 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 LINC00862A6NCI5 91 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms