RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 AMN1Q8IY45 258 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 Q8N3U1 123 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 UBE2WQ96B02 151 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 C1orf43Q9BWL3 253 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 RBX1P62877 108 aa9.61□□□□□ -0.87
CCDC88C-207ENST00000554051 GAGE6Q13070 117 aa9.61□□□□□ -0.87
CCDC88C-207ENST00000554051 RPL39LQ96EH5 51 aaKnown RBP9.61□□□□□ -0.87
CCDC88C-207ENST00000554051 RNF185Q96GF1 192 aa9.61□□□□□ -0.87
CCDC88C-207ENST00000554051 IGKV2D-24A0A075B6R9 120 aa9.6□□□□□ -0.87
CCDC88C-207ENST00000554051 TCAPO15273 167 aa9.6□□□□□ -0.87
CCDC88C-207ENST00000554051 CAMPP49913 170 aa9.6□□□□□ -0.87
CCDC88C-207ENST00000554051 FAM104BQ5XKR9 115 aa9.6□□□□□ -0.87
CCDC88C-207ENST00000554051 TRBV27A0A0K0K1C4 114 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 A0A1B0GXF2 115 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 TMEM218A2RU14 115 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 LRCOL1A6NCL2 159 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 PPBPP02775 128 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 SMAGPQ0VAQ4 97 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 MRPL54Q6P161 138 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 COMMD7Q86VX2 200 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 IMMP2LQ96T52 175 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 TMEM70Q9BUB7 260 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 SEC11CQ9BY50 192 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 PRR34Q9NV39 138 aa9.59□□□□□ -0.87
CCDC88C-207ENST00000554051 ZNF25P17030 456 aaPredicted RBP9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 PMCHP20382 165 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 AMMECR1LQ6DCA0 310 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 Q8N814 137 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 Q8N976 141 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 BTF3L4Q96K17 158 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 KIR2DL4Q99706 377 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 C20orf78Q9BR46 151 aa9.58□□□□□ -0.88
CCDC88C-207ENST00000554051 TRAV8-4A0A0B4J246 113 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 VCYO14598 125 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 PHOX2AO14813 284 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 CDK2AP2O75956 126 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 SUMO2P61956 95 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 RPL32P62910 135 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 C14orf177Q52M58 125 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 CTDSP1Q9GZU7 261 aa9.57□□□□□ -0.88
CCDC88C-207ENST00000554051 TRAV9-1A0A075B6T8 112 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 CKS2P33552 79 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 KRTAP10-2P60368 255 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 REG3AQ06141 175 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 MRPL51Q4U2R6 128 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 ENHOQ6UWT2 76 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 LAMTOR2Q9Y2Q5 125 aa9.56□□□□□ -0.88
CCDC88C-207ENST00000554051 TRBV24-1A0A075B6N3 115 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 C7orf77A4D0Y5 90 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 ADCYAP1P18509 176 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 FCER1GP30273 86 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 RPS10P46783 165 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 POLR2KP53803 58 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 LINC00269Q8N2A0 174 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 NRACQ8N912 160 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 TMEM101Q96IK0 257 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 KRTAP3-3Q9BYR6 98 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 KRTAP3-2Q9BYR7 98 aa9.55□□□□□ -0.88
CCDC88C-207ENST00000554051 DNAH11Q96DT5 4516 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 IGLV5-52A0A0A0MRZ9 124 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 TSHBP01222 138 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 ORMDL3Q8N138 153 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 C20orf203Q8NBC4 194 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 TMEM18Q96B42 140 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 TMEM242Q9NWH2 141 aa9.54□□□□□ -0.88
CCDC88C-207ENST00000554051 FGF6P10767 208 aa9.53□□□□□ -0.88
CCDC88C-207ENST00000554051 ESDP10768 282 aa9.53□□□□□ -0.88
CCDC88C-207ENST00000554051 S100PP25815 95 aa9.53□□□□□ -0.88
CCDC88C-207ENST00000554051 RHEBQ15382 184 aa9.53□□□□□ -0.88
CCDC88C-207ENST00000554051 CARHSP1Q9Y2V2 147 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-207ENST00000554051 PKD1P98161 4303 aa9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 D6R8Y8 96 aa9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 SMKR1H3BMG3 65 aa9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 GAS8-AS1O95177 125 aa9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 NDUFA5Q16718 116 aa9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 RNASEKQ6P5S7 137 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 MRPL52Q86TS9 123 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-207ENST00000554051 PKHD1P08F94 4074 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 IGLV4-60A0A075B6I1 120 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 IGKV2-29A2NJV5 120 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 TNFRSF6BO95407 300 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 HLA-DQA1P01909 254 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 GCSHP23434 173 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 C10orf91Q5T1B1 145 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 CLPSL2Q6UWE3 100 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 OR5A1Q8NGJ0 315 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 SMIM2Q9BVW6 85 aa9.51□□□□□ -0.89
CCDC88C-207ENST00000554051 COX19Q49B96 90 aa9.5□□□□□ -0.89
CCDC88C-207ENST00000554051 BAALCQ8WXS3 180 aa9.5□□□□□ -0.89
CCDC88C-207ENST00000554051 TMEM136Q6ZRR5 245 aa9.49□□□□□ -0.89
CCDC88C-207ENST00000554051 MAPKAPK5-AS1Q8N8E1 139 aa9.49□□□□□ -0.89
CCDC88C-207ENST00000554051 PRELID3AQ96N28 172 aa9.49□□□□□ -0.89
CCDC88C-207ENST00000554051 CSDC2Q9Y534 153 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-207ENST00000554051 DGAT2L7PQ6IED9 249 aa9.48□□□□□ -0.89
CCDC88C-207ENST00000554051 CLRN3Q8NCR9 226 aa9.48□□□□□ -0.89
CCDC88C-207ENST00000554051 DEFB104AQ8WTQ1 72 aa9.48□□□□□ -0.89
CCDC88C-207ENST00000554051 TIMM21Q9BVV7 248 aa9.48□□□□□ -0.89
CCDC88C-207ENST00000554051 USP17L23D6RBM5 183 aa9.47□□□□□ -0.89
CCDC88C-207ENST00000554051 K7EMI3 77 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms