RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 C1QTNF4Q9BXJ3 329 aa4.34□□□□□ -1.71
VIPAS39-204ENST00000553576 CHTOPQ9Y3Y2 248 aaKnown RBP4.34□□□□□ -1.71
VIPAS39-204ENST00000553576 PYGO1Q9Y3Y4 419 aa4.34□□□□□ -1.71
VIPAS39-204ENST00000553576 UNC79Q9P2D8 2635 aa4.34□□□□□ -1.72
VIPAS39-204ENST00000553576 CRLF1O75462 422 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 AZU1P20160 251 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 SEC11AP67812 179 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 DAZ2Q13117 558 aaKnown RBP4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 FHL2Q14192 279 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 TMEM97Q5BJF2 176 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 PCP2Q8IVA1 136 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 LINC00469Q8N7U9 141 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 TMEM263Q8WUH6 116 aaKnown RBP4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 ORAOV1Q8WV07 137 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 OVOL2Q9BRP0 275 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 CST9LQ9H4G1 147 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 XCL2Q9UBD3 114 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 TNFRSF18Q9Y5U5 241 aa4.33□□□□□ -1.72
VIPAS39-204ENST00000553576 IGKV2D-26A0A0A0MRZ7 120 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 TRBV10-1A0A0K0K1A3 114 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 INAFM1C9JVW0 142 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 E9PLD3 99 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 PRM2P04554 102 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 HTN1P15515 57 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 RPL39P62891 51 aaKnown RBP4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 HSD52Q0P140 79 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 BATFQ16520 125 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 TAL2Q16559 108 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 GTSCR1Q86UQ5 136 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 NFE4Q86UQ8 179 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 C16orf74Q96GX8 76 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 TP53TG1Q9Y2A0 90 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 COX11Q9Y6N1 276 aa4.32□□□□□ -1.72
VIPAS39-204ENST00000553576 FASNP49327 2511 aaKnown RBP4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 IGLV4-69A0A075B6H9 119 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 TRBV25-1A0A075B6N4 114 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 TRAV4A0A0B4J268 109 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 PLAC8L1A1L4L8 177 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 C11orf86A6NJI1 115 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 NMUP48645 174 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 C9orf66Q5T8R8 295 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 Q6ZSN1 163 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 NEGR1Q7Z3B1 354 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 MAPKAPK5-AS1Q8N8E1 139 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 AMELXQ99217 191 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 CITED1Q99966 193 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 TMEM208Q9BTX3 173 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 TIMM21Q9BVV7 248 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 TP73-AS1Q9UF72 201 aa4.31□□□□□ -1.72
VIPAS39-204ENST00000553576 MTORP42345 2549 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 IGLV4-3A0A075B6K6 122 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 A6NDN8 102 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 SMIM9A6NGZ8 99 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 H3BRM9 83 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 TAX1BP3O14907 124 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 ZNF25P17030 456 aaPredicted RBP4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 WFDC9Q8NEX5 89 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 OR4C5Q8NGB2 326 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 FAM104AQ969W3 186 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 CHCHD7Q9BUK0 85 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 TM2D2Q9BX73 214 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 SPANXA1Q9NS26 97 aa4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 MRPL16Q9NX20 251 aaKnown RBP4.3□□□□□ -1.72
VIPAS39-204ENST00000553576 TRBV7-3A0A075B6L6 115 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 MYMXA0A1B0GTQ4 84 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 HERVK_113P61574 105 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 MRPS36P82909 103 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 RRN3P1Q2M238 152 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 DAZ4Q86SG3 579 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 LINC00612Q8N6U2 182 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 OR11H2Q8NH07 326 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 KIR2DL5BQ8NHK3 375 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 WWC2-AS2Q96NR7 200 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 VCX2Q9H322 139 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 DAZ3Q9NR90 486 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 Q9UF83 564 aa4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 CSDC2Q9Y534 153 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 GCN1Q92616 2671 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 FN1P02751 2386 aaKnown RBP4.29□□□□□ -1.72
VIPAS39-204ENST00000553576 SETXQ7Z333 2677 aaKnown RBP4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 TRGV1A0A0A0MS02 117 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 IGHV3-73A0A0B4J1V6 119 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 TRAV8-6A0A0B4J262 113 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 TRBV6-4A0A1B0GX49 114 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 RPL36AP83881 106 aaKnown RBP4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 UBE2V1Q13404 147 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 COTL1Q14019 142 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 Q6ZTI0 123 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 FAM19A3Q7Z5A8 133 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 CEND1Q8N111 149 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 ZNRF2Q8NHG8 242 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 RPL36ALQ969Q0 106 aaKnown RBP4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 ZNF479Q96JC4 524 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 PRADC1Q9BSG0 188 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 CHAC1Q9BUX1 264 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 GTSF1LQ9H1H1 148 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 UBE2D4Q9Y2X8 147 aa4.28□□□□□ -1.72
VIPAS39-204ENST00000553576 C2CD3Q4AC94 2353 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 OTOGQ6ZRI0 2925 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV3OR16-12A0A075B7B8 117 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms