RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TMEM167BQ9NRX6 74 aa8.53□□□□□ -1.04
VPS29-209ENST00000551655 SNAI2O43623 268 aa8.52□□□□□ -1.05
VPS29-209ENST00000551655 SSBP4Q9BWG4 385 aaPredicted RBP8.52□□□□□ -1.05
VPS29-209ENST00000551655 ZFP30Q9Y2G7 519 aa8.52□□□□□ -1.05
VPS29-209ENST00000551655 IGHV1-58A0A0C4DH39 117 aa8.51□□□□□ -1.05
VPS29-209ENST00000551655 A0A1W2PRE2 83 aa8.51□□□□□ -1.05
VPS29-209ENST00000551655 CXorf1O96002 111 aa8.51□□□□□ -1.05
VPS29-209ENST00000551655 SMIM17P0DL12 118 aa8.51□□□□□ -1.05
VPS29-209ENST00000551655 LINC01547P58512 204 aaPredicted RBP8.51□□□□□ -1.05
VPS29-209ENST00000551655 CDIP1Q9H305 208 aa8.51□□□□□ -1.05
VPS29-209ENST00000551655 CAMPP49913 170 aa8.5□□□□□ -1.05
VPS29-209ENST00000551655 RPL18AQ02543 176 aaKnown RBP8.5□□□□□ -1.05
VPS29-209ENST00000551655 LCE3BQ5TA77 95 aa8.5□□□□□ -1.05
VPS29-209ENST00000551655 PPP1R1CQ8WVI7 109 aa8.5□□□□□ -1.05
VPS29-209ENST00000551655 PGLYRP4Q96LB8 373 aa8.5□□□□□ -1.05
VPS29-209ENST00000551655 AP1S3Q96PC3 154 aa8.5□□□□□ -1.05
VPS29-209ENST00000551655 IGLV4-69A0A075B6H9 119 aa8.49□□□□□ -1.05
VPS29-209ENST00000551655 FAM168BA1KXE4 195 aa8.49□□□□□ -1.05
VPS29-209ENST00000551655 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.49□□□□□ -1.05
VPS29-209ENST00000551655 ZNF561-AS1K7EIQ3 104 aa8.49□□□□□ -1.05
VPS29-209ENST00000551655 CCL25O15444 150 aa8.49□□□□□ -1.05
VPS29-209ENST00000551655 MEF2BQ02080 365 aaPredicted RBP8.49□□□□□ -1.05
VPS29-209ENST00000551655 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.48□□□□□ -1.05
VPS29-209ENST00000551655 IGKV2-29A2NJV5 120 aaPredicted RBP8.48□□□□□ -1.05
VPS29-209ENST00000551655 LTAP01374 205 aa8.48□□□□□ -1.05
VPS29-209ENST00000551655 OR5AL1P0C617 328 aa8.48□□□□□ -1.05
VPS29-209ENST00000551655 H2BFSP57053 126 aa8.48□□□□□ -1.05
VPS29-209ENST00000551655 UBE2G1P62253 170 aa8.48□□□□□ -1.05
VPS29-209ENST00000551655 COTL1Q14019 142 aa8.48□□□□□ -1.05
VPS29-209ENST00000551655 RNASEKQ6P5S7 137 aaKnown RBP8.48□□□□□ -1.05
VPS29-209ENST00000551655 FAM74A7A6NL05 159 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 MPC2O95563 127 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 FGF6P10767 208 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 AMMECR1LQ6DCA0 310 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 NUP35Q8NFH5 326 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 HIST1H2BAQ96A08 127 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 FMC1Q96HJ9 113 aa8.47□□□□□ -1.05
VPS29-209ENST00000551655 OPRPNQ99935 248 aaPredicted RBP8.47□□□□□ -1.05
VPS29-209ENST00000551655 ATP6V0CP27449 155 aa8.46□□□□□ -1.06
VPS29-209ENST00000551655 ZNF726P1Q15940 193 aa8.46□□□□□ -1.06
VPS29-209ENST00000551655 RASL11AQ6T310 242 aa8.46□□□□□ -1.06
VPS29-209ENST00000551655 OR5A1Q8NGJ0 315 aa8.46□□□□□ -1.06
VPS29-209ENST00000551655 KRTAP4-12Q9BQ66 201 aa8.46□□□□□ -1.06
VPS29-209ENST00000551655 LINC00959A0A1B0GUT2 108 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 CCDC160A6NGH7 325 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 KRTAP9-7A8MTY7 169 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 APOMO95445 188 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 CXCL1P09341 107 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 Q6ZNX1 250 aa8.45□□□□□ -1.06
VPS29-209ENST00000551655 ACTR3CQ9C0K3 210 aaPredicted RBP8.45□□□□□ -1.06
VPS29-209ENST00000551655 RPP21Q9H633 154 aaKnown RBP8.45□□□□□ -1.06
VPS29-209ENST00000551655 A0A087X002 238 aa8.44□□□□□ -1.06
VPS29-209ENST00000551655 KRTAP4-1Q9BYQ7 146 aa8.44□□□□□ -1.06
VPS29-209ENST00000551655 CARHSP1Q9Y2V2 147 aaKnown RBP8.44□□□□□ -1.06
VPS29-209ENST00000551655 TPRXLQ17RH7 258 aa8.43□□□□□ -1.06
VPS29-209ENST00000551655 FAM19A5Q7Z5A7 132 aaPredicted RBP8.43□□□□□ -1.06
VPS29-209ENST00000551655 ISOC2Q96AB3 205 aa8.43□□□□□ -1.06
VPS29-209ENST00000551655 CAMK2N2Q96S95 79 aa8.43□□□□□ -1.06
VPS29-209ENST00000551655 MLST8Q9BVC4 326 aa8.43□□□□□ -1.06
VPS29-209ENST00000551655 NIT2Q9NQR4 276 aa8.43□□□□□ -1.06
VPS29-209ENST00000551655 DEFA1P59665 94 aa8.42□□□□□ -1.06
VPS29-209ENST00000551655 TPPP3Q9BW30 176 aa8.42□□□□□ -1.06
VPS29-209ENST00000551655 MED28Q9H204 178 aa8.42□□□□□ -1.06
VPS29-209ENST00000551655 FAM240BA0A1B0GVZ2 78 aa8.41□□□□□ -1.06
VPS29-209ENST00000551655 NTF3P20783 257 aa8.41□□□□□ -1.06
VPS29-209ENST00000551655 AKR1C3P42330 323 aa8.41□□□□□ -1.06
VPS29-209ENST00000551655 KRTAP7-1Q8IUC3 87 aa8.41□□□□□ -1.06
VPS29-209ENST00000551655 PSMG3Q9BT73 122 aaPredicted RBP8.41□□□□□ -1.06
VPS29-209ENST00000551655 BCL2L11O43521 198 aa8.4□□□□□ -1.06
VPS29-209ENST00000551655 MBP02144 154 aa8.4□□□□□ -1.06
VPS29-209ENST00000551655 IGLV7-46A0A075B6I9 117 aa8.39□□□□□ -1.07
VPS29-209ENST00000551655 PET100P0DJ07 73 aa8.39□□□□□ -1.07
VPS29-209ENST00000551655 CRYGAP11844 174 aa8.39□□□□□ -1.07
VPS29-209ENST00000551655 CD164L2Q6UWJ8 174 aa8.39□□□□□ -1.07
VPS29-209ENST00000551655 UBE2BP63146 152 aa8.38□□□□□ -1.07
VPS29-209ENST00000551655 EIF5AL1Q6IS14 154 aaKnown RBP8.38□□□□□ -1.07
VPS29-209ENST00000551655 TYMSOSQ8TAI1 123 aa8.38□□□□□ -1.07
VPS29-209ENST00000551655 NKX6-2Q9C056 277 aaPredicted RBP8.38□□□□□ -1.07
VPS29-209ENST00000551655 TNFSF18Q9UNG2 199 aa8.38□□□□□ -1.07
VPS29-209ENST00000551655 SERF2P84101 59 aa8.37□□□□□ -1.07
VPS29-209ENST00000551655 SS18Q15532 418 aa8.37□□□□□ -1.07
VPS29-209ENST00000551655 KRTAP9-9Q9BYP9 154 aa8.37□□□□□ -1.07
VPS29-209ENST00000551655 KRTAP9-4Q9BYQ2 154 aa8.37□□□□□ -1.07
VPS29-209ENST00000551655 CTXND1A0A1B0GTU2 59 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 INMT-MINDY4F8WBC2 141 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 APCSP02743 223 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 IGLC6P0CF74 106 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 MALP21145 153 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 CST9LP1Q5W188 147 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 STOML3Q8TAV4 291 aa8.36□□□□□ -1.07
VPS29-209ENST00000551655 RPL39LQ96EH5 51 aaKnown RBP8.36□□□□□ -1.07
VPS29-209ENST00000551655 M0QXV9 152 aa8.35□□□□□ -1.07
VPS29-209ENST00000551655 GATD1Q8NB37 220 aa8.35□□□□□ -1.07
VPS29-209ENST00000551655 TSKUQ8WUA8 353 aa8.35□□□□□ -1.07
VPS29-209ENST00000551655 ANAPC11Q9NYG5 84 aa8.35□□□□□ -1.07
VPS29-209ENST00000551655 COX7A2LO14548 114 aa8.34□□□□□ -1.07
VPS29-209ENST00000551655 BAGE2Q86Y30 109 aa8.34□□□□□ -1.07
VPS29-209ENST00000551655 TMEM101Q96IK0 257 aa8.34□□□□□ -1.07
VPS29-209ENST00000551655 BTF3L4Q96K17 158 aa8.34□□□□□ -1.07
VPS29-209ENST00000551655 C2orf48Q96LS8 159 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms