RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 BCE1O60756 84 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 APOC4P55056 127 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 TM2D3Q9BRN9 247 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 SMIM2Q9BVW6 85 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 ACANP16112 2415 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 IGHV3-43A0A0B4J1X8 118 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IGHV5-51A0A0C4DH38 117 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IBA57-AS1B1ANH7 110 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IGHV3-43DP0DP04 118 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 HOXA4Q00056 320 aaPredicted RBP6.94□□□□□ -1.3
PTCH1-220ENST00000550136 C6orf223Q8N319 242 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 HES7Q9BYE0 225 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 KLK15Q9H2R5 256 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IGKV3D-11A0A0A0MRZ8 115 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IGHV1-45A0A0A0MS14 117 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 DEFB108AA8MXU0 73 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 NDUFC1O43677 76 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 IGF1P05019 195 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 EGR2P11161 476 aaPredicted RBP6.94□□□□□ -1.3
PTCH1-220ENST00000550136 Q8N2B8 174 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 LY6G5BQ8NDX9 201 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 MPLKIPQ8TAP9 179 aa6.94□□□□□ -1.3
PTCH1-220ENST00000550136 NSD1Q96L73 2696 aaPredicted RBP6.93□□□□□ -1.3
PTCH1-220ENST00000550136 M0R1B8 84 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 LEPROTO15243 131 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 NXPH4O95158 308 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 DNAL4O96015 105 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 DAD1P61803 113 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 RPL39P5Q59GN2 51 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 ADAMTSL4-AS1Q5T5F5 129 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 C2orf66Q6UXQ4 117 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 LYPD1Q8N2G4 141 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 CCDC140Q96MF4 163 aa6.93□□□□□ -1.3
PTCH1-220ENST00000550136 MED12Q93074 2177 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 PRRC2AP48634 2157 aaKnown RBP6.92□□□□□ -1.3
PTCH1-220ENST00000550136 TRAV7A0A075B6U4 112 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 TRAV13-2A0A0B4J235 113 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 IGIPA6NJ69 53 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 PSPNO60542 156 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 NFAM1Q8NET5 270 aaPredicted RBP6.92□□□□□ -1.3
PTCH1-220ENST00000550136 C22orf24Q9Y442 160 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 STAB1Q9NY15 2570 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 CSPG4Q6UVK1 2322 aa6.92□□□□□ -1.3
PTCH1-220ENST00000550136 IGLV3-32A0A0A0MS00 114 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 F8WEM9 126 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 M0R1W7 72 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 HOXD3P31249 432 aaPredicted RBP6.91□□□□□ -1.3
PTCH1-220ENST00000550136 IMMP1LQ96LU5 166 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 BPESC1Q9GZL8 116 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 DSCAML1Q8TD84 2053 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 BAALC-AS2P0C853 105 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 FOLR3P41439 243 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 ERHP84090 104 aaKnown RBP6.91□□□□□ -1.3
PTCH1-220ENST00000550136 BEAN1Q3B7T3 259 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 KHDC1LQ5JSQ8 128 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 ATP5EP2Q5VTU8 51 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 KTN1-AS1Q86SY8 53 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 DSCAMO60469 2012 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 NBEAL1Q6ZS30 2694 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 COL6A5A8TX70 2615 aa6.91□□□□□ -1.3
PTCH1-220ENST00000550136 FLNAP21333 2647 aaKnown RBP6.91□□□□□ -1.3
PTCH1-220ENST00000550136 COX7A2LO14548 114 aa6.9□□□□□ -1.3
PTCH1-220ENST00000550136 RPL28P46779 137 aaKnown RBP6.9□□□□□ -1.3
PTCH1-220ENST00000550136 WDR86Q86TI4 376 aa6.9□□□□□ -1.3
PTCH1-220ENST00000550136 ZNF575Q86XF7 245 aa6.9□□□□□ -1.3
PTCH1-220ENST00000550136 LINC00846Q9NV44 126 aa6.9□□□□□ -1.3
PTCH1-220ENST00000550136 FN1P02751 2386 aaKnown RBP6.9□□□□□ -1.3
PTCH1-220ENST00000550136 FAM229BQ4G0N7 80 aa6.9□□□□□ -1.31
PTCH1-220ENST00000550136 TMEM61Q8N0U2 210 aa6.9□□□□□ -1.31
PTCH1-220ENST00000550136 JMJD1CQ15652 2540 aa6.9□□□□□ -1.31
PTCH1-220ENST00000550136 TRAV23DV6A0A075B6W5 121 aa6.89□□□□□ -1.31
PTCH1-220ENST00000550136 A0A0J9YXY3 114 aa6.89□□□□□ -1.31
PTCH1-220ENST00000550136 IGHV1-69DA0A0B4J2H0 117 aa6.89□□□□□ -1.31
PTCH1-220ENST00000550136 GRPP07492 148 aa6.89□□□□□ -1.31
PTCH1-220ENST00000550136 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.89□□□□□ -1.31
PTCH1-220ENST00000550136 LITAFQ99732 161 aa6.89□□□□□ -1.31
PTCH1-220ENST00000550136 MRPL36Q9P0J6 103 aaKnown RBP6.89□□□□□ -1.31
PTCH1-220ENST00000550136 IGHV3-15A0A0B4J1V0 119 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 TRAV12-3A0A0B4J271 114 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 NDUFB3O43676 98 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 SOSTDC1Q6X4U4 206 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 ABCA4P78363 2273 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 TRBV12-3P01733 135 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 TRGV3P03979 118 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 ZNF826PQ6ZT77 177 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 DCTN5Q9BTE1 182 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 NDUFA4L2Q9NRX3 87 aa6.88□□□□□ -1.31
PTCH1-220ENST00000550136 NACAE9PAV3 2078 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 LHBP01229 141 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 SUMO2P61956 95 aaKnown RBP6.87□□□□□ -1.31
PTCH1-220ENST00000550136 S100A7L2Q5SY68 101 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 UNQ9165/PRO28630Q6UXU0 137 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 Q6ZSV7 163 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 RMI2Q96E14 147 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 SMR3AQ99954 134 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 C11orf68Q9H3H3 251 aaKnown RBP6.87□□□□□ -1.31
PTCH1-220ENST00000550136 DOCK10Q96BY6 2186 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 TSHBP01222 138 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 BLCAPP62952 87 aa6.87□□□□□ -1.31
PTCH1-220ENST00000550136 MAP1AP78559 2803 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms