RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 Q9H521 79 aa3.91□□□□□ -1.78
LIMA1-204ENST00000549064 MUC17Q685J3 4493 aa3.91□□□□□ -1.78
LIMA1-204ENST00000549064 IGLV8-61A0A075B6I0 122 aa3.9□□□□□ -1.79
LIMA1-204ENST00000549064 GCGP01275 180 aa3.9□□□□□ -1.79
LIMA1-204ENST00000549064 RBX1P62877 108 aa3.9□□□□□ -1.79
LIMA1-204ENST00000549064 UBE2L3P68036 154 aaKnown RBP3.9□□□□□ -1.79
LIMA1-204ENST00000549064 HIGD2BQ4VC39 106 aa3.9□□□□□ -1.79
LIMA1-204ENST00000549064 NPCDR1Q9BY65 106 aa3.9□□□□□ -1.79
LIMA1-204ENST00000549064 LSM5Q9Y4Y9 91 aaKnown RBP3.9□□□□□ -1.79
LIMA1-204ENST00000549064 TRBV7-3A0A075B6L6 115 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 IGSF23A1L1A6 192 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 IFNA7P01567 189 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 FAUP35544 74 aaKnown RBP3.89□□□□□ -1.79
LIMA1-204ENST00000549064 RPS10P46783 165 aaKnown RBP3.89□□□□□ -1.79
LIMA1-204ENST00000549064 S100A10P60903 97 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 REG3AQ06141 175 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 NTM-AS1Q6ZSK4 140 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 C15orf56Q8N910 161 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 INO80EQ8NBZ0 244 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-204ENST00000549064 CMTM2Q8TAZ6 248 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 C11orf1Q9H5F2 150 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 VCX3AQ9NNX9 186 aa3.89□□□□□ -1.79
LIMA1-204ENST00000549064 IGKV3D-20A0A0C4DH25 116 aa3.88□□□□□ -1.79
LIMA1-204ENST00000549064 H3BVH4 76 aa3.88□□□□□ -1.79
LIMA1-204ENST00000549064 S100A4P26447 101 aaKnown RBP3.88□□□□□ -1.79
LIMA1-204ENST00000549064 SLC25A21Q9BQT8 299 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-204ENST00000549064 OTORQ9NRC9 128 aa3.88□□□□□ -1.79
LIMA1-204ENST00000549064 FLVCR2Q9UPI3 526 aa3.88□□□□□ -1.79
LIMA1-204ENST00000549064 A0A087WXM4 84 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 TRBV10-1A0A0K0K1A3 114 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 S100A11P31949 105 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 SULT1A1P50225 295 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 Q1RN00 199 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 TOMM5Q8N4H5 51 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 TMEM252Q8N6L7 170 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 C20orf203Q8NBC4 194 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 KIR2DL4Q99706 377 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 NDFIP1Q9BT67 221 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 OR5AC2Q9NZP5 309 aa3.87□□□□□ -1.79
LIMA1-204ENST00000549064 RSL24D1Q9UHA3 163 aaKnown RBP3.87□□□□□ -1.79
LIMA1-204ENST00000549064 IGLV4-60A0A075B6I1 120 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 ARMS2P0C7Q2 107 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 PKIAP61925 76 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 SPCS2Q15005 226 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 SMUG1Q53HV7 270 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 C1orf137Q5JT78 98 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 SUN5Q8TC36 379 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 SFRP2Q96HF1 295 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 LYRM2Q9NU23 88 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-204ENST00000549064 IL36BQ9NZH7 164 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 PSG8Q9UQ74 426 aa3.86□□□□□ -1.79
LIMA1-204ENST00000549064 IGLV1-50A0A075B6I6 118 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 TRAV8-4A0A0B4J246 113 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 GRIFINA4D1Z8 144 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 M0R381 172 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 P01737 135 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 MT-ND6P03923 174 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 S100A9P06702 114 aaKnown RBP3.85□□□□□ -1.79
LIMA1-204ENST00000549064 KRTAP1-4P0C5Y4 121 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 HBG1P69891 147 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 HBG2P69892 147 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 KHDC3LQ587J8 217 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 FAM74A1Q5RGS3 127 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 PRNTQ86SH4 94 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 STX12Q86Y82 276 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 FER1L6-AS1Q8NA97 138 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 LINC00526Q96FQ7 95 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 HIST1H4GQ99525 98 aa3.85□□□□□ -1.79
LIMA1-204ENST00000549064 A0A1W2PNN7 141 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 M0R036 132 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 GZMBP10144 247 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 AP3S2P59780 193 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 FLI1Q01543 452 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-204ENST00000549064 ZNF56Q15929 161 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 ATP6V1FQ16864 119 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 PYDC2Q56P42 97 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 TYMSOSQ8TAI1 123 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 MITD1Q8WV92 249 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 DIRC1Q969H9 104 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 DERL1Q9BUN8 251 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 LINC00474Q9P2X8 69 aa3.84□□□□□ -1.79
LIMA1-204ENST00000549064 TRBV25-1A0A075B6N4 114 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 IGKV3OR2-268A0A0C4DH90 116 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 TRBV6-1A0A0K0K1D8 114 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 B4DEV8 164 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 H0Y9J4 135 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 HMGB3O15347 200 aaKnown RBP3.83□□□□□ -1.8
LIMA1-204ENST00000549064 NDUFB6O95139 128 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 ATP6V1G2O95670 118 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 MBP02144 154 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 IGLV7-43P04211 117 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 TCRAP04437 139 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 PVALBP20472 110 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-204ENST00000549064 BTCP35070 178 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 UBE2D1P51668 147 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 TAS2R45P59539 299 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 RAB2AP61019 212 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 PHF5AQ7RTV0 110 aaKnown RBP3.83□□□□□ -1.8
LIMA1-204ENST00000549064 OR5C1Q8NGR4 320 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 ACTR3CQ9C0K3 210 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms