RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ZNF462Q96JM2 2506 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 MGAQ8IWI9 3026 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 A8MZ25 164 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 ELANEP08246 267 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 HERVK_113P63121 156 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 PRO0461Q9UI25 63 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 SPTBN4Q9H254 2564 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 A0A0B4J2C4 111 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 IGHV4-59P01825 116 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 Q8N9W7 124 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 PKD1L2Q7Z442 2459 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 UBE2D3P61077 147 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 UBE2D2P62837 147 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 MDFICQ9P1T7 246 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 UNQ9165/PRO28630Q6UXU0 137 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 J3QLI3 93 aa10.76□□□□□ -0.69
LIMS1-215ENST00000544547 DEFB112Q30KQ8 113 aa10.75□□□□□ -0.69
LIMS1-215ENST00000544547 HOXB4P17483 251 aaPredicted RBP10.75□□□□□ -0.69
LIMS1-215ENST00000544547 PRR9Q5T870 116 aa10.75□□□□□ -0.69
LIMS1-215ENST00000544547 hADV29S1A0JD25 119 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 J3QKU1 62 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 CENPVL3A0A0U1RRI6 287 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 LINC00694P0DN24 101 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 IGHV4-61A0A0C4DH41 118 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 TRBV12-3P01733 135 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 ZNF22P17026 224 aaPredicted RBP10.74□□□□□ -0.69
LIMS1-215ENST00000544547 C20orf203Q8NBC4 194 aa10.74□□□□□ -0.69
LIMS1-215ENST00000544547 LINC00643Q86TS7 51 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 TMEM243Q9BU79 118 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 ATOX1O00244 68 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 NXPH4O95158 308 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 P0DMU3 169 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 FAM231AP0DMU4 169 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 FAM231CP0DMU5 169 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 Q6ZSV7 163 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 TSPEAR-AS2P59090 65 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 HAMPP81172 84 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 SDIM1Q6ZPB5 146 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 Q8NA96 180 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 C1orf43Q9BWL3 253 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 CNFNQ9BYD5 112 aa10.73□□□□□ -0.69
LIMS1-215ENST00000544547 UQCRQO14949 82 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 PRB1P04280 392 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 BLCAPP62952 87 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 DAZ2Q13117 558 aaKnown RBP10.72□□□□□ -0.69
LIMS1-215ENST00000544547 DAZ4Q86SG3 579 aaKnown RBP10.72□□□□□ -0.69
LIMS1-215ENST00000544547 C20orf173Q96LM9 149 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 CCDC140Q96MF4 163 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 DAZ3Q9NR90 486 aaKnown RBP10.72□□□□□ -0.69
LIMS1-215ENST00000544547 ZNF561-AS1K7EIQ3 104 aa10.72□□□□□ -0.69
LIMS1-215ENST00000544547 DEFB136Q30KP8 78 aa10.71□□□□□ -0.69
LIMS1-215ENST00000544547 LRRK2Q5S007 2527 aa10.71□□□□□ -0.69
LIMS1-215ENST00000544547 IGHV1-58A0A0C4DH39 117 aa10.71□□□□□ -0.69
LIMS1-215ENST00000544547 C3orf22Q8N5N4 141 aa10.71□□□□□ -0.69
LIMS1-215ENST00000544547 DNAJC30Q96LL9 226 aa10.71□□□□□ -0.7
LIMS1-215ENST00000544547 IGLV2-18A0A075B6J9 118 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 A0A096LPF7 62 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 TMEM223A0PJW6 202 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 VPREB3Q9UKI3 123 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 H7C423 109 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 ZFP36P26651 326 aaKnown RBP10.7□□□□□ -0.7
LIMS1-215ENST00000544547 PPDPFQ9H3Y8 114 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 TRBV30A0A0K0K1B3 111 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 NDUFA7O95182 113 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 KLK5Q9Y337 293 aaPredicted RBP10.7□□□□□ -0.7
LIMS1-215ENST00000544547 ZFAND2AQ8N6M9 145 aa10.7□□□□□ -0.7
LIMS1-215ENST00000544547 TMEM263Q8WUH6 116 aaKnown RBP10.7□□□□□ -0.7
LIMS1-215ENST00000544547 MIAQ16674 131 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 FAM110AQ9BQ89 295 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 C14orf132Q9NPU4 83 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 PRRC2AP48634 2157 aaKnown RBP10.69□□□□□ -0.7
LIMS1-215ENST00000544547 IGHV4-30-2A0A087WSY4 118 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 SPANXDQ9BXN6 97 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 PCSK5Q92824 1860 aa10.69□□□□□ -0.7
LIMS1-215ENST00000544547 IGHV4-38-2P0DP08 117 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 C5orf47Q569G3 176 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 OVOL2Q9BRP0 275 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 ZNF580Q9UK33 172 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 LOC107984640A0A0U1RRK4 108 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 F8WEM9 126 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 H3BUA1 57 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 RBMY1FQ15415 496 aaKnown RBP10.68□□□□□ -0.7
LIMS1-215ENST00000544547 ZFAND3Q9H8U3 227 aa10.68□□□□□ -0.7
LIMS1-215ENST00000544547 TRAV13-2A0A0B4J235 113 aa10.67□□□□□ -0.7
LIMS1-215ENST00000544547 UBL5Q9BZL1 73 aa10.67□□□□□ -0.7
LIMS1-215ENST00000544547 FASNP49327 2511 aaKnown RBP10.67□□□□□ -0.7
LIMS1-215ENST00000544547 ANGP03950 147 aaKnown RBP10.67□□□□□ -0.7
LIMS1-215ENST00000544547 IGLV4-3A0A075B6K6 122 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 ATP5G1P05496 136 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 COL6A3P12111 3177 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 FHL3Q13643 280 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 CDKN2A-AS1Q9UH64 79 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 U3KQE9 123 aa10.66□□□□□ -0.7
LIMS1-215ENST00000544547 LECT2O14960 151 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 RNASE3P12724 160 aaKnown RBP10.65□□□□□ -0.7
LIMS1-215ENST00000544547 APOC4P55056 127 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 CLPSL2Q6UWE3 100 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 IGLV4-69A0A075B6H9 119 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 IGF2-ASQ6U949 168 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 NRGNQ92686 78 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms