RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 IGLC6P0CF74 106 aa11.06□□□□□ -0.64
CLSTN3-214ENST00000542663 CFAP161Q6P656 301 aa11.06□□□□□ -0.64
CLSTN3-214ENST00000542663 REG3GQ6UW15 175 aa11.06□□□□□ -0.64
CLSTN3-214ENST00000542663 RASL11AQ6T310 242 aa11.05□□□□□ -0.64
CLSTN3-214ENST00000542663 GVQW2A0A096LPI5 108 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-214ENST00000542663 UBE2L6O14933 153 aa11.04□□□□□ -0.64
CLSTN3-214ENST00000542663 NIT2Q9NQR4 276 aa11.04□□□□□ -0.64
CLSTN3-214ENST00000542663 IGKV3OR2-268A0A0C4DH90 116 aa11.03□□□□□ -0.64
CLSTN3-214ENST00000542663 AMTP48728 403 aa11.03□□□□□ -0.64
CLSTN3-214ENST00000542663 TMUB2Q71RG4 321 aa11.03□□□□□ -0.64
CLSTN3-214ENST00000542663 FER1L6-AS1Q8NA97 138 aa11.03□□□□□ -0.64
CLSTN3-214ENST00000542663 TPPP3Q9BW30 176 aa11.03□□□□□ -0.64
CLSTN3-214ENST00000542663 A0A1B0GV50 99 aa11.02□□□□□ -0.65
CLSTN3-214ENST00000542663 ZNF345Q14585 488 aa11.02□□□□□ -0.65
CLSTN3-214ENST00000542663 MBD3L1Q8WWY6 194 aa11.02□□□□□ -0.65
CLSTN3-214ENST00000542663 CHCHD10Q8WYQ3 142 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-214ENST00000542663 COTL1Q14019 142 aa11.01□□□□□ -0.65
CLSTN3-214ENST00000542663 KCNRGQ8N5I3 272 aa11.01□□□□□ -0.65
CLSTN3-214ENST00000542663 SFT2D1Q8WV19 159 aa11.01□□□□□ -0.65
CLSTN3-214ENST00000542663 PFDN1O60925 122 aa11□□□□□ -0.65
CLSTN3-214ENST00000542663 RPL35P42766 123 aaKnown RBP11□□□□□ -0.65
CLSTN3-214ENST00000542663 CACNG7P62955 275 aa11□□□□□ -0.65
CLSTN3-214ENST00000542663 HMSDA8MTL9 139 aa10.99□□□□□ -0.65
CLSTN3-214ENST00000542663 FOXI1Q12951 378 aa10.99□□□□□ -0.65
CLSTN3-214ENST00000542663 Q6ZRP5 223 aa10.99□□□□□ -0.65
CLSTN3-214ENST00000542663 C19orf71A6NCJ1 209 aa10.98□□□□□ -0.65
CLSTN3-214ENST00000542663 OR2D3Q8NGH3 330 aa10.98□□□□□ -0.65
CLSTN3-214ENST00000542663 FAM213BQ8TBF2 198 aa10.98□□□□□ -0.65
CLSTN3-214ENST00000542663 LINC00526Q96FQ7 95 aa10.98□□□□□ -0.65
CLSTN3-214ENST00000542663 LINC00474Q9P2X8 69 aa10.98□□□□□ -0.65
CLSTN3-214ENST00000542663 BCL2L11O43521 198 aa10.97□□□□□ -0.65
CLSTN3-214ENST00000542663 KANTRA0A1W2PQU2 76 aa10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 TRGC1P0CF51 173 aa10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 NTF3P20783 257 aa10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 RPS20P60866 119 aaKnown RBP10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 LYZL1Q6UWQ5 148 aa10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 Q6ZNX1 250 aa10.96□□□□□ -0.65
CLSTN3-214ENST00000542663 F2Z2F3 143 aa10.95□□□□□ -0.66
CLSTN3-214ENST00000542663 CENPWQ5EE01 88 aa10.95□□□□□ -0.66
CLSTN3-214ENST00000542663 C11orf52Q96A22 123 aa10.95□□□□□ -0.66
CLSTN3-214ENST00000542663 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 TRAV26-2A0A0B4J265 109 aa10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 IGKV2-29A2NJV5 120 aaPredicted RBP10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 AMMECR1LQ6DCA0 310 aa10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 GATD1Q8NB37 220 aa10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 CARD19Q96LW7 228 aa10.94□□□□□ -0.66
CLSTN3-214ENST00000542663 UMAD1C9J7I0 102 aa10.93□□□□□ -0.66
CLSTN3-214ENST00000542663 RNASEKQ6P5S7 137 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-214ENST00000542663 FGF6P10767 208 aa10.92□□□□□ -0.66
CLSTN3-214ENST00000542663 XCL1P47992 114 aa10.92□□□□□ -0.66
CLSTN3-214ENST00000542663 RPL39LQ96EH5 51 aaKnown RBP10.92□□□□□ -0.66
CLSTN3-214ENST00000542663 PKIGQ9Y2B9 76 aa10.92□□□□□ -0.66
CLSTN3-214ENST00000542663 RAB19A4D1S5 217 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 H7C423 109 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 IFNA1P01562 189 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 H2AFB1P0C5Y9 115 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 CTRLP40313 264 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 EIF5AP63241 154 aaKnown RBP10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 CCL20P78556 96 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 TCTE3Q8IZS6 198 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 C9orf62Q8N4C0 152 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 OR5A1Q8NGJ0 315 aa10.91□□□□□ -0.66
CLSTN3-214ENST00000542663 IGHV1-58A0A0C4DH39 117 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 LINC00959A0A1B0GUT2 108 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 XKRY2A2RUG3 117 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 CCL25O15444 150 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 NCR2O95944 276 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 PTTG1IPP53801 180 aa10.9□□□□□ -0.66
CLSTN3-214ENST00000542663 TRBV20OR9-2A0A075B6H5 130 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 A0A1W2PNN7 141 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 FAM231BA6NCW3 169 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 APCSP02743 223 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 SYCNQ0VAF6 134 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 SMIM12Q96EX1 92 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 CNFNQ9BYD5 112 aa10.89□□□□□ -0.67
CLSTN3-214ENST00000542663 GNG4P50150 75 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 TWIST1Q15672 202 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 MANBALQ9NQG1 85 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 GNG13Q9P2W3 67 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 PSORS1C2Q9UIG4 136 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 MUC2Q02817 5179 aa10.88□□□□□ -0.67
CLSTN3-214ENST00000542663 hCG_2014768A0A024R1R8 64 aa10.87□□□□□ -0.67
CLSTN3-214ENST00000542663 ZNF25P17030 456 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-214ENST00000542663 GAGE2BQ13066 116 aa10.87□□□□□ -0.67
CLSTN3-214ENST00000542663 SDHAF1A6NFY7 115 aa10.86□□□□□ -0.67
CLSTN3-214ENST00000542663 LOC107984640A0A0U1RRK4 108 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 ZNF561-AS1K7EIQ3 104 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 FOXA3P55318 350 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 AKAP14Q86UN6 197 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 ZNF664Q8N3J9 261 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 NUDT10Q8NFP7 164 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 NUDT11Q96G61 164 aa10.85□□□□□ -0.67
CLSTN3-214ENST00000542663 CAMPP49913 170 aa10.84□□□□□ -0.67
CLSTN3-214ENST00000542663 PRR26Q8N8Z3 221 aa10.84□□□□□ -0.67
CLSTN3-214ENST00000542663 IGLV4-69A0A075B6H9 119 aa10.83□□□□□ -0.68
CLSTN3-214ENST00000542663 BCL2P10415 239 aa10.83□□□□□ -0.68
CLSTN3-214ENST00000542663 ESDP10768 282 aa10.83□□□□□ -0.68
CLSTN3-214ENST00000542663 CD164L2Q6UWJ8 174 aa10.83□□□□□ -0.68
CLSTN3-214ENST00000542663 BTF3L4Q96K17 158 aa10.83□□□□□ -0.68
CLSTN3-214ENST00000542663 KRTAP9-2Q9BYQ4 174 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms