RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 C3orf79P0CE67 100 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 GYPEP15421 78 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 C12orf74Q32Q52 190 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 PYY3Q5JQD4 70 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 LINC00173Q6ZV60 143 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 C11orf45Q8TAV5 145 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 DEFB104AQ8WTQ1 72 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 TOMM6Q96B49 74 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 IFI27L1Q96BM0 104 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 SCGB3A1Q96QR1 104 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 B9D2Q9BPU9 175 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 Q9UF83 564 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 MGAM2Q2M2H8 2515 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.19□□□□□ -1.58
VPS53-205ENST00000541903 LINC00694P0DN24 101 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 TMEM97Q5BJF2 176 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 PET117Q6UWS5 81 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 Q6ZN92 141 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 C20orf203Q8NBC4 194 aa5.19□□□□□ -1.58
VPS53-205ENST00000541903 TRAV26-1A0A087WT03 109 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 A0A0J9YY99 117 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 PRSS1P07477 247 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 NANOS2P60321 138 aaKnown RBP5.18□□□□□ -1.58
VPS53-205ENST00000541903 Q6ZTC4 211 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 ERASQ7Z444 233 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 LINC00518Q8N0U6 118 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 ATP6V0E2Q8NHE4 81 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 TMEM141Q96I45 108 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 VSIG2Q96IQ7 327 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 TIMM17AQ99595 171 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 C12orf57Q99622 126 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 CHCHD7Q9BUK0 85 aa5.18□□□□□ -1.58
VPS53-205ENST00000541903 NACAE9PAV3 2078 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 TRBV25-1A0A075B6N4 114 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 UBE2L6O14933 153 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 RPL39P62891 51 aaKnown RBP5.17□□□□□ -1.58
VPS53-205ENST00000541903 S100A12P80511 92 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 SMAGPQ0VAQ4 97 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 MRPL23Q16540 153 aaKnown RBP5.17□□□□□ -1.58
VPS53-205ENST00000541903 SH2D6Q7Z4S9 175 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 SPATA12Q7Z6I5 190 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 Q8N976 141 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 TMEM243Q9BU79 118 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 GTSF1LQ9H1H1 148 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 SPANXA1Q9NS26 97 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 ICOSQ9Y6W8 199 aa5.17□□□□□ -1.58
VPS53-205ENST00000541903 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.16□□□□□ -1.58
VPS53-205ENST00000541903 DEFB131BA0A096LNP1 70 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 IGKV2-29A2NJV5 120 aaPredicted RBP5.16□□□□□ -1.58
VPS53-205ENST00000541903 IGIPA6NJ69 53 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 NHLRC4P0CG21 123 aaPredicted RBP5.16□□□□□ -1.58
VPS53-205ENST00000541903 DEFA6Q01524 100 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 PAPPA-AS1Q5QFB9 102 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 LINC01545Q5VT33 79 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 LGALS9CQ6DKI2 356 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 PYGO1Q9Y3Y4 419 aa5.16□□□□□ -1.58
VPS53-205ENST00000541903 NOTCH1P46531 2555 aa5.15□□□□□ -1.58
VPS53-205ENST00000541903 A0A096LPF7 62 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 TRBV6-8A0A0A6YYG3 113 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 TRAV10A0A0B4J240 114 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 TRAV12-1A0A0B4J245 112 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 H3BNG1 76 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 H7C423 109 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 NPSP0C0P6 89 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 PMVKQ15126 192 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 AMMECR1LQ6DCA0 310 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 DGAT2L7PQ6IED9 249 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 NTM-AS1Q6ZSK4 140 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 BAALCQ8WXS3 180 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 PMCHL2Q9BQD1 86 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 CHCHD5Q9BSY4 110 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 VAMP8Q9BV40 100 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 TIMM21Q9BVV7 248 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 UBE2D4Q9Y2X8 147 aa5.15□□□□□ -1.59
VPS53-205ENST00000541903 CMYA5Q8N3K9 4069 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 A0A087WX48 190 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 HSBP1L1C9JCN9 74 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 FGF6P10767 208 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 ODF1Q14990 250 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 CDPF1Q6NVV7 123 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 TEX43Q6ZNM6 134 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 ATOH7Q8N100 152 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 OR5A1Q8NGJ0 315 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 TMEM101Q96IK0 257 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 VCX2Q9H322 139 aa5.14□□□□□ -1.59
VPS53-205ENST00000541903 CHTOPQ9Y3Y2 248 aaKnown RBP5.14□□□□□ -1.59
VPS53-205ENST00000541903 DNAH3Q8TD57 4116 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 IGLV4-3A0A075B6K6 122 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 TRAV9-2A0A087WT02 112 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 PRSS29PA6NIE9 313 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 F8VRH5 84 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 DPM2O94777 84 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 ZNF25P17030 456 aaPredicted RBP5.13□□□□□ -1.59
VPS53-205ENST00000541903 PLNP26678 52 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 MRPS36P82909 103 aaKnown RBP5.13□□□□□ -1.59
VPS53-205ENST00000541903 GAGE6Q13070 117 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 CEMP1Q6PRD7 247 aaPredicted RBP5.13□□□□□ -1.59
VPS53-205ENST00000541903 Q6ZUT4 128 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 MRPL52Q86TS9 123 aaKnown RBP5.13□□□□□ -1.59
VPS53-205ENST00000541903 OPRPNQ99935 248 aaPredicted RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms