RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 PRSS3P2Q8NHM4 247 aa7.69□□□□□ -1.18
SNHG1-216ENST00000541416 NIT2Q9NQR4 276 aa7.69□□□□□ -1.18
SNHG1-216ENST00000541416 F2Z2F3 143 aa7.68□□□□□ -1.18
SNHG1-216ENST00000541416 HIGD2BQ4VC39 106 aa7.68□□□□□ -1.18
SNHG1-216ENST00000541416 TMUB2Q71RG4 321 aa7.68□□□□□ -1.18
SNHG1-216ENST00000541416 SFT2D1Q8WV19 159 aa7.68□□□□□ -1.18
SNHG1-216ENST00000541416 GFRA4Q9GZZ7 299 aa7.68□□□□□ -1.18
SNHG1-216ENST00000541416 GVQW2A0A096LPI5 108 aaPredicted RBP7.67□□□□□ -1.18
SNHG1-216ENST00000541416 IGKV3OR2-268A0A0C4DH90 116 aa7.67□□□□□ -1.18
SNHG1-216ENST00000541416 UMAD1C9J7I0 102 aa7.67□□□□□ -1.18
SNHG1-216ENST00000541416 KRTAP10-8P60410 259 aa7.67□□□□□ -1.18
SNHG1-216ENST00000541416 AMMECR1LQ6DCA0 310 aa7.67□□□□□ -1.18
SNHG1-216ENST00000541416 Q6ZRP5 223 aa7.67□□□□□ -1.18
SNHG1-216ENST00000541416 OR2D3Q8NGH3 330 aa7.66□□□□□ -1.18
SNHG1-216ENST00000541416 GAS8-AS1O95177 125 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 IGLC6P0CF74 106 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 RPL35P42766 123 aaKnown RBP7.65□□□□□ -1.18
SNHG1-216ENST00000541416 ODF1Q14990 250 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 KCNRGQ8N5I3 272 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 FAM213BQ8TBF2 198 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 MBD3L1Q8WWY6 194 aa7.65□□□□□ -1.18
SNHG1-216ENST00000541416 CHCHD10Q8WYQ3 142 aaPredicted RBP7.65□□□□□ -1.18
SNHG1-216ENST00000541416 A0A096LNI7 61 aa7.64□□□□□ -1.19
SNHG1-216ENST00000541416 FAM231BA6NCW3 169 aa7.64□□□□□ -1.19
SNHG1-216ENST00000541416 ARPC5O15511 151 aa7.64□□□□□ -1.19
SNHG1-216ENST00000541416 RNASEKQ6P5S7 137 aaKnown RBP7.64□□□□□ -1.19
SNHG1-216ENST00000541416 A0A1B0GV50 99 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 H7C423 109 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 NCR2O95944 276 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 IFNA1P01562 189 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 SMIM12Q96EX1 92 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 BTF3L4Q96K17 158 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 CARD19Q96LW7 228 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 BIN3Q9NQY0 253 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 CYTL1Q9NRR1 136 aa7.63□□□□□ -1.19
SNHG1-216ENST00000541416 IGHV1-58A0A0C4DH39 117 aa7.62□□□□□ -1.19
SNHG1-216ENST00000541416 H2AFB1P0C5Y9 115 aa7.62□□□□□ -1.19
SNHG1-216ENST00000541416 ZNF25P17030 456 aaPredicted RBP7.62□□□□□ -1.19
SNHG1-216ENST00000541416 NTF3P20783 257 aa7.62□□□□□ -1.19
SNHG1-216ENST00000541416 SRSF9Q13242 221 aaKnown RBP eCLIP7.62□□□□□ -1.19
SNHG1-216ENST00000541416 CENPWQ5EE01 88 aa7.62□□□□□ -1.19
SNHG1-216ENST00000541416 MANBALQ9NQG1 85 aa7.62□□□□□ -1.19
SNHG1-216ENST00000541416 ZNF561-AS1K7EIQ3 104 aa7.61□□□□□ -1.19
SNHG1-216ENST00000541416 APCSP02743 223 aa7.61□□□□□ -1.19
SNHG1-216ENST00000541416 LYZL1Q6UWQ5 148 aa7.61□□□□□ -1.19
SNHG1-216ENST00000541416 SMIM15Q7Z3B0 74 aa7.61□□□□□ -1.19
SNHG1-216ENST00000541416 TMEM101Q96IK0 257 aa7.61□□□□□ -1.19
SNHG1-216ENST00000541416 TEX46H3BTG2 121 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 XCL1P47992 114 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 GNG4P50150 75 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 FOXI1Q12951 378 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 TWIST1Q15672 202 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 TEX261Q6UWH6 196 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 ZNF664Q8N3J9 261 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 OR5A1Q8NGJ0 315 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 C11orf52Q96A22 123 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 ISOC2Q96AB3 205 aa7.6□□□□□ -1.19
SNHG1-216ENST00000541416 C19orf71A6NCJ1 209 aa7.59□□□□□ -1.19
SNHG1-216ENST00000541416 FGF6P10767 208 aa7.59□□□□□ -1.19
SNHG1-216ENST00000541416 EIF5AP63241 154 aaKnown RBP7.59□□□□□ -1.19
SNHG1-216ENST00000541416 SYCNQ0VAF6 134 aa7.59□□□□□ -1.19
SNHG1-216ENST00000541416 C9orf62Q8N4C0 152 aa7.59□□□□□ -1.19
SNHG1-216ENST00000541416 GNG13Q9P2W3 67 aa7.59□□□□□ -1.19
SNHG1-216ENST00000541416 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.58□□□□□ -1.2
SNHG1-216ENST00000541416 IGKV2-29A2NJV5 120 aaPredicted RBP7.58□□□□□ -1.2
SNHG1-216ENST00000541416 CCL20P78556 96 aa7.58□□□□□ -1.2
SNHG1-216ENST00000541416 ZNF345Q14585 488 aa7.58□□□□□ -1.2
SNHG1-216ENST00000541416 SS18Q15532 418 aa7.58□□□□□ -1.2
SNHG1-216ENST00000541416 EIF5AL1Q6IS14 154 aaKnown RBP7.58□□□□□ -1.2
SNHG1-216ENST00000541416 FAM210AQ96ND0 272 aa7.58□□□□□ -1.2
SNHG1-216ENST00000541416 LOC107984640A0A0U1RRK4 108 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 KANTRA0A1W2PQU2 76 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 CCL25O15444 150 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 PDE6DO43924 150 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 MT-ND6P03923 174 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 CTRLP40313 264 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 PTTG1IPP53801 180 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 Q6ZNX1 250 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 GATD1Q8NB37 220 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 PSORS1C2Q9UIG4 136 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 LPAP08519 4548 aa7.57□□□□□ -1.2
SNHG1-216ENST00000541416 TRAV26-2A0A0B4J265 109 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 LINC00959A0A1B0GUT2 108 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 PMCHP20382 165 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 CAMPP49913 170 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 CD164L2Q6UWJ8 174 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 CNFNQ9BYD5 112 aa7.56□□□□□ -1.2
SNHG1-216ENST00000541416 SDHAF1A6NFY7 115 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 G3V3Q6 166 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 I3L3M4 83 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 MALP21145 153 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 GAGE2BQ13066 116 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 LINC00526Q96FQ7 95 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 MRAP2Q96G30 205 aa7.55□□□□□ -1.2
SNHG1-216ENST00000541416 RAB19A4D1S5 217 aa7.54□□□□□ -1.2
SNHG1-216ENST00000541416 BCL2L11O43521 198 aa7.54□□□□□ -1.2
SNHG1-216ENST00000541416 MEF2BQ02080 365 aaPredicted RBP7.54□□□□□ -1.2
SNHG1-216ENST00000541416 TSKUQ8WUA8 353 aa7.54□□□□□ -1.2
SNHG1-216ENST00000541416 RPL39LQ96EH5 51 aaKnown RBP7.54□□□□□ -1.2
SNHG1-216ENST00000541416 MED9Q9NWA0 146 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms