RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NAT8Q9UHE5 227 aa9.33□□□□□ -0.92
USP28-209ENST00000540925 A0A1B0GUT8 65 aa9.32□□□□□ -0.92
USP28-209ENST00000540925 A0A1B0GUV1 79 aa9.32□□□□□ -0.92
USP28-209ENST00000540925 PEA15Q15121 130 aa9.32□□□□□ -0.92
USP28-209ENST00000540925 MIAQ16674 131 aa9.32□□□□□ -0.92
USP28-209ENST00000540925 TMEM191AQ9H0A3 160 aa9.32□□□□□ -0.92
USP28-209ENST00000540925 TRBV6-5A0A0K0K1A5 114 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 SMIM15Q7Z3B0 74 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 C20orf203Q8NBC4 194 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 NUP35Q8NFH5 326 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 RNF185Q96GF1 192 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 TMEM243Q9BU79 118 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 TMEM70Q9BUB7 260 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 C1orf43Q9BWL3 253 aa9.31□□□□□ -0.92
USP28-209ENST00000540925 GAS8-AS1O95177 125 aa9.3□□□□□ -0.92
USP28-209ENST00000540925 CRPP02741 224 aa9.3□□□□□ -0.92
USP28-209ENST00000540925 COTL1Q14019 142 aa9.3□□□□□ -0.92
USP28-209ENST00000540925 Q6ZSA8 131 aa9.3□□□□□ -0.92
USP28-209ENST00000540925 LINC00269Q8N2A0 174 aa9.3□□□□□ -0.92
USP28-209ENST00000540925 IGLV4-60A0A075B6I1 120 aa9.29□□□□□ -0.92
USP28-209ENST00000540925 SMIM27A0A1W2PRY6 76 aa9.29□□□□□ -0.92
USP28-209ENST00000540925 ADIRFQ15847 76 aa9.29□□□□□ -0.92
USP28-209ENST00000540925 DEFB104AQ8WTQ1 72 aa9.29□□□□□ -0.92
USP28-209ENST00000540925 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
USP28-209ENST00000540925 SDHAF1A6NFY7 115 aa9.28□□□□□ -0.92
USP28-209ENST00000540925 NCR2O95944 276 aa9.28□□□□□ -0.92
USP28-209ENST00000540925 RAB4AP20338 218 aa9.28□□□□□ -0.92
USP28-209ENST00000540925 AMTP48728 403 aa9.28□□□□□ -0.92
USP28-209ENST00000540925 BORCS7Q96B45 105 aa9.28□□□□□ -0.92
USP28-209ENST00000540925 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.27□□□□□ -0.93
USP28-209ENST00000540925 RPS10P46783 165 aaKnown RBP9.27□□□□□ -0.93
USP28-209ENST00000540925 REG3AQ06141 175 aa9.27□□□□□ -0.93
USP28-209ENST00000540925 CLPSL2Q6UWE3 100 aa9.27□□□□□ -0.93
USP28-209ENST00000540925 NAT8BQ9UHF3 227 aa9.27□□□□□ -0.93
USP28-209ENST00000540925 POLR2KP53803 58 aaKnown RBP9.26□□□□□ -0.93
USP28-209ENST00000540925 AMN1Q8IY45 258 aa9.26□□□□□ -0.93
USP28-209ENST00000540925 MRAP2Q96G30 205 aa9.26□□□□□ -0.93
USP28-209ENST00000540925 SRRM2Q9UQ35 2752 aaKnown RBP9.26□□□□□ -0.93
USP28-209ENST00000540925 TRBV27A0A0K0K1C4 114 aa9.25□□□□□ -0.93
USP28-209ENST00000540925 USP17L23D6RBM5 183 aa9.25□□□□□ -0.93
USP28-209ENST00000540925 H7C423 109 aa9.25□□□□□ -0.93
USP28-209ENST00000540925 TSHBP01222 138 aa9.25□□□□□ -0.93
USP28-209ENST00000540925 RIGQ13278 110 aa9.25□□□□□ -0.93
USP28-209ENST00000540925 TRAV8-4A0A0B4J246 113 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 I3L3M4 83 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 ESDP10768 282 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 HAMPP81172 84 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 C14orf177Q52M58 125 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 NRACQ8N912 160 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 ST20Q9HBF5 79 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 MYCBP2O75592 4640 aa9.24□□□□□ -0.93
USP28-209ENST00000540925 DMBT1Q9UGM3 2413 aaPredicted RBP9.23□□□□□ -0.93
USP28-209ENST00000540925 UBE2L6O14933 153 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 HLA-DQA1P01909 254 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 APCSP02743 223 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 PRSS1P07477 247 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 LINC01620Q4KN68 170 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 FAM104BQ5XKR9 115 aa9.23□□□□□ -0.93
USP28-209ENST00000540925 IGLV10-54A0A075B6I4 117 aa9.22□□□□□ -0.93
USP28-209ENST00000540925 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.22□□□□□ -0.93
USP28-209ENST00000540925 A0A1B0GW15 77 aa9.22□□□□□ -0.93
USP28-209ENST00000540925 A0A1B0GXF2 115 aa9.22□□□□□ -0.93
USP28-209ENST00000540925 IGKV2-29A2NJV5 120 aaPredicted RBP9.22□□□□□ -0.93
USP28-209ENST00000540925 EPM2AB3EWF7 344 aa9.22□□□□□ -0.93
USP28-209ENST00000540925 CLLU1Q5K131 121 aa9.22□□□□□ -0.93
USP28-209ENST00000540925 SMKR1H3BMG3 65 aa9.21□□□□□ -0.94
USP28-209ENST00000540925 FGF6P10767 208 aa9.21□□□□□ -0.94
USP28-209ENST00000540925 PMCHP20382 165 aa9.21□□□□□ -0.94
USP28-209ENST00000540925 IFITM2Q01629 132 aa9.21□□□□□ -0.94
USP28-209ENST00000540925 MRPL51Q4U2R6 128 aaKnown RBP9.21□□□□□ -0.94
USP28-209ENST00000540925 TMEM242Q9NWH2 141 aa9.21□□□□□ -0.94
USP28-209ENST00000540925 SMR3BP02814 79 aaPredicted RBP9.2□□□□□ -0.94
USP28-209ENST00000540925 ZNF25P17030 456 aaPredicted RBP9.2□□□□□ -0.94
USP28-209ENST00000540925 RAB14P61106 215 aa9.2□□□□□ -0.94
USP28-209ENST00000540925 Q5VSD8 79 aa9.2□□□□□ -0.94
USP28-209ENST00000540925 TRBV24-1A0A075B6N3 115 aa9.19□□□□□ -0.94
USP28-209ENST00000540925 PPP1R17O96001 155 aa9.19□□□□□ -0.94
USP28-209ENST00000540925 SUMO2P61956 95 aaKnown RBP9.19□□□□□ -0.94
USP28-209ENST00000540925 DGAT2L7PQ6IED9 249 aa9.19□□□□□ -0.94
USP28-209ENST00000540925 MRPL52Q86TS9 123 aaKnown RBP9.19□□□□□ -0.94
USP28-209ENST00000540925 CLRN3Q8NCR9 226 aa9.19□□□□□ -0.94
USP28-209ENST00000540925 LINC00862A6NCI5 91 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 VCYO14598 125 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 CAMPP49913 170 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 RPL32P62910 135 aaKnown RBP9.18□□□□□ -0.94
USP28-209ENST00000540925 HBBP68871 147 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 PNRC1Q12796 327 aaPredicted RBP9.18□□□□□ -0.94
USP28-209ENST00000540925 AMMECR1LQ6DCA0 310 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 PKHD1L1Q86WI1 4243 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 C9orf163Q8N9P6 203 aa9.18□□□□□ -0.94
USP28-209ENST00000540925 CNBPP62633 177 aaKnown RBP9.17□□□□□ -0.94
USP28-209ENST00000540925 MRPL54Q6P161 138 aaKnown RBP9.17□□□□□ -0.94
USP28-209ENST00000540925 SCXQ7RTU7 201 aa9.17□□□□□ -0.94
USP28-209ENST00000540925 ATP5L2Q7Z4Y8 100 aa9.17□□□□□ -0.94
USP28-209ENST00000540925 C20orf78Q9BR46 151 aa9.17□□□□□ -0.94
USP28-209ENST00000540925 C7orf77A4D0Y5 90 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 PPP1R2P9O14990 202 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 SLPIP03973 132 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 S100A8P05109 93 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 RNASEKQ6P5S7 137 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms