RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FAM231AP0DMU4 169 aa10.01□□□□□ -0.81
RTN3-210ENST00000540798 FAM231CP0DMU5 169 aa10.01□□□□□ -0.81
RTN3-210ENST00000540798 ACANP16112 2415 aa10.01□□□□□ -0.81
RTN3-210ENST00000540798 OR11H12B2RN74 326 aa10□□□□□ -0.81
RTN3-210ENST00000540798 I3L3M4 83 aa10□□□□□ -0.81
RTN3-210ENST00000540798 HTN1P15515 57 aa10□□□□□ -0.81
RTN3-210ENST00000540798 LINC01587Q99440 93 aa10□□□□□ -0.81
RTN3-210ENST00000540798 TRBV25-1A0A075B6N4 114 aa10□□□□□ -0.81
RTN3-210ENST00000540798 CFAP126Q5VTH2 177 aa10□□□□□ -0.81
RTN3-210ENST00000540798 MAPKAPK5-AS1Q8N8E1 139 aa10□□□□□ -0.81
RTN3-210ENST00000540798 FAM110AQ9BQ89 295 aa10□□□□□ -0.81
RTN3-210ENST00000540798 H3BRM9 83 aa10□□□□□ -0.81
RTN3-210ENST00000540798 PMVKQ15126 192 aa10□□□□□ -0.81
RTN3-210ENST00000540798 STHQ8IWL8 128 aa10□□□□□ -0.81
RTN3-210ENST00000540798 C1orf158Q8N1D5 194 aa10□□□□□ -0.81
RTN3-210ENST00000540798 K7ERJ3 54 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 IGLV1-51P01701 117 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 MT-ATP8P03928 68 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 SMR3AQ99954 134 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 SPATA25Q9BR10 227 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 CMC4P56277 68 aaPredicted RBP9.99□□□□□ -0.81
RTN3-210ENST00000540798 CHAC1Q9BUX1 264 aa9.99□□□□□ -0.81
RTN3-210ENST00000540798 E9PLD3 99 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 RS1O15537 224 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 C20orf203Q8NBC4 194 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 SPANXB1Q9NS25 103 aaPredicted RBP9.98□□□□□ -0.81
RTN3-210ENST00000540798 MRPL16Q9NX20 251 aaKnown RBP9.98□□□□□ -0.81
RTN3-210ENST00000540798 SPINK8P0C7L1 97 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 FABP2P12104 132 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 PAPPA-AS1Q5QFB9 102 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 DEFB104AQ8WTQ1 72 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 C19orf73Q9NVV2 129 aa9.98□□□□□ -0.81
RTN3-210ENST00000540798 A6NDN8 102 aa9.97□□□□□ -0.81
RTN3-210ENST00000540798 RHODO00212 210 aa9.97□□□□□ -0.81
RTN3-210ENST00000540798 Q6ZSN1 163 aa9.97□□□□□ -0.81
RTN3-210ENST00000540798 OR5A1Q8NGJ0 315 aa9.97□□□□□ -0.81
RTN3-210ENST00000540798 XCL2Q9UBD3 114 aa9.97□□□□□ -0.81
RTN3-210ENST00000540798 LY6G6DO95868 133 aa9.96□□□□□ -0.81
RTN3-210ENST00000540798 SAMD5Q5TGI4 173 aa9.96□□□□□ -0.81
RTN3-210ENST00000540798 IGHV3-73A0A0B4J1V6 119 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 KRTAP10-3P60369 221 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 TM2D2Q9BX73 214 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 IGHV3-53P01767 116 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 GIG44P09565 113 aaPredicted RBP9.96□□□□□ -0.82
RTN3-210ENST00000540798 TAL2Q16559 108 aa9.96□□□□□ -0.82
RTN3-210ENST00000540798 OR11H2Q8NH07 326 aa9.95□□□□□ -0.82
RTN3-210ENST00000540798 MYMXA0A1B0GTQ4 84 aa9.95□□□□□ -0.82
RTN3-210ENST00000540798 NFE4Q86UQ8 179 aa9.95□□□□□ -0.82
RTN3-210ENST00000540798 DNAJC30Q96LL9 226 aa9.95□□□□□ -0.82
RTN3-210ENST00000540798 PYGO1Q9Y3Y4 419 aa9.95□□□□□ -0.82
RTN3-210ENST00000540798 FAM104AQ969W3 186 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 H3BMG7 143 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 NDUFA11Q86Y39 141 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 ZNRF2Q8NHG8 242 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 ANAPC13Q9BS18 74 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 PRADC1Q9BSG0 188 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 Q9UF83 564 aa9.94□□□□□ -0.82
RTN3-210ENST00000540798 CEND1Q8N111 149 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 TNFRSF18Q9Y5U5 241 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 OTOGQ6ZRI0 2925 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 FXYD2P54710 66 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 ERG28Q9UKR5 140 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 MTORP42345 2549 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 IGLV4-3A0A075B6K6 122 aa9.93□□□□□ -0.82
RTN3-210ENST00000540798 NIPBLQ6KC79 2804 aaeCLIP9.92□□□□□ -0.82
RTN3-210ENST00000540798 TMEM263Q8WUH6 116 aaKnown RBP9.92□□□□□ -0.82
RTN3-210ENST00000540798 C1QTNF4Q9BXJ3 329 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 WNK1Q9H4A3 2382 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 TRBV7-3A0A075B6L6 115 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 XGP55808 180 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 GAGE5Q13069 117 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 GAGE6Q13070 117 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 OPRPNQ99935 248 aaPredicted RBP9.92□□□□□ -0.82
RTN3-210ENST00000540798 CHCHD7Q9BUK0 85 aa9.92□□□□□ -0.82
RTN3-210ENST00000540798 AMELXQ99217 191 aa9.91□□□□□ -0.82
RTN3-210ENST00000540798 J3QR89 54 aa9.91□□□□□ -0.82
RTN3-210ENST00000540798 GCSHP23434 173 aa9.91□□□□□ -0.82
RTN3-210ENST00000540798 C3orf56Q8N813 242 aa9.91□□□□□ -0.82
RTN3-210ENST00000540798 CSNK1G2-AS1Q8NCQ2 148 aa9.91□□□□□ -0.82
RTN3-210ENST00000540798 EMP1P54849 157 aa9.9□□□□□ -0.82
RTN3-210ENST00000540798 PHLDA1Q8WV24 401 aaPredicted RBP9.9□□□□□ -0.82
RTN3-210ENST00000540798 CDIP1Q9H305 208 aa9.9□□□□□ -0.82
RTN3-210ENST00000540798 HERVK_113P61574 105 aa9.9□□□□□ -0.82
RTN3-210ENST00000540798 WFDC10AQ9H1F0 79 aa9.9□□□□□ -0.82
RTN3-210ENST00000540798 PLAC8L1A1L4L8 177 aa9.89□□□□□ -0.83
RTN3-210ENST00000540798 DAZ2Q13117 558 aaKnown RBP9.89□□□□□ -0.83
RTN3-210ENST00000540798 LINC00482Q8N8I6 264 aa9.89□□□□□ -0.83
RTN3-210ENST00000540798 TEP1Q99973 2627 aaKnown RBP9.89□□□□□ -0.83
RTN3-210ENST00000540798 IGHV3OR16-12A0A075B7B8 117 aa9.89□□□□□ -0.83
RTN3-210ENST00000540798 CCDC179H3BU77 68 aa9.89□□□□□ -0.83
RTN3-210ENST00000540798 PPDPFQ9H3Y8 114 aa9.89□□□□□ -0.83
RTN3-210ENST00000540798 TRBV20-1A0A075B6N2 111 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 M0QXV9 152 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 SMIM13P0DJ93 91 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 HIVEP2P31629 2446 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 TMEM223A0PJW6 202 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 ZNF815PA8K554 130 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 UBE2D4Q9Y2X8 147 aa9.88□□□□□ -0.83
RTN3-210ENST00000540798 TRGV1A0A0A0MS02 117 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms