RNA–Protein interactions for RNA: ENST00000540783.5

RAPGEF4-215, Transcript of Rap guanine nucleotide exchange factor 4, human

TSL 2 BASIC

Gene RAPGEF4, Length 3,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF4-215	ENST00000540783	IGHV3-30-5	P0DP03	117 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	ASIP	P42127	132 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	C10orf126	Q8N4M7	172 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	RNF152	Q8N8N0	203 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	ZNRF2	Q8NHG8	242 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NTN5	Q8WTR8	489 aa	Predicted RBP	4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	PRO1854	Q9UHT4	67 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	ATR	Q13535	2644 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IGHV4-4	A0A075B6R2	117 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	EIF4EBP3	O60516	100 aa	Predicted RBP	4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	FAM74A4	Q5TZK3	123 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	C9orf47	Q6ZRZ4	202 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	MRAP	Q8TCY5	172 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	DUX3	Q96PT4	197 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	COL12A1	Q99715	3063 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRBV12-3	P01733	135 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	HERVK_113	P61574	105 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	ZFAND2A	Q8N6M9	145 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	CITED1	Q99966	193 aa		4.21	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	CCDC179	H3BU77	68 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NHLRC4	P0CG21	123 aa	Predicted RBP	4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE5	Q13069	117 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE6	Q13070	117 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	UNQ9165/PRO28630	Q6UXU0	137 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TEX49	A0A1B0GTD5	131 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LGALS3	P17931	250 aa	Known RBP	4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	DEFB131A	P59861	70 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE2B	Q13066	116 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE2E	Q4V326	116 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LYRM7	Q5U5X0	104 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE2D	Q9UEU5	116 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	CELSR1	Q9NYQ6	3014 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TENM4	Q6N022	2769 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRAV21	A0A0B4J279	112 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783		J3QQQ9	107 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NPC2	P61916	151 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	PMVK	Q15126	192 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	MUSTN1	Q8IVN3	82 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SLC25A29	Q8N8R3	303 aa		4.2	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IGIP	A6NJ69	53 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SNCG	O76070	127 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IGKV3-20	P01619	116 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	PRSS2	P07478	247 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	RNASE3	P12724	160 aa	Known RBP	4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783		Q8N1Y9	231 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SUMO4	Q6EEV6	95 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LINC00477	Q96M19	166 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	MUC4	Q99102	2169 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SDHAF1	A6NFY7	115 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	INS	P01308	110 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IGHV3-33	P01772	117 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TTC32	Q5I0X7	151 aa		4.19	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SBSPON	Q8IVN8	264 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LINC00482	Q8N8I6	264 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	AMELX	Q99217	191 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TMEM262	E9PQX1	116 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	EDN2	P20800	178 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NDUFV3	P56181	108 aa	Known RBP	4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LINC00315	P59091	139 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	PRIMA1	Q86XR5	153 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	MRPL53	Q96EL3	112 aa	Known RBP	4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LINC01587	Q99440	93 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	COL6A5	A8TX70	2615 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IGHV3OR16-12	A0A075B7B8	117 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783		A0A0J9YXV3	536 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	RPL35A	P18077	110 aa	Known RBP	4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	CFHR3	Q02985	330 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	DEFB114	Q30KQ6	69 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	RNASE13	Q5GAN3	156 aa	Known RBP	4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	FAM159A	Q6UWV7	190 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SMIM20	Q8N5G0	67 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	C15orf53	Q8NAA6	179 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	VCX2	Q9H322	139 aa		4.18	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NOTCH1	P46531	2555 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	HRNR	Q86YZ3	2850 aa	Predicted RBP	4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRAV12-3	A0A0B4J271	114 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TMEM263	Q8WUH6	116 aa	Known RBP	4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	SPX	Q9BT56	116 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	NOTCH3	Q9UM47	2321 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRGV11	A0A075B6L2	103 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	RHOD	O00212	210 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	VCY	O14598	125 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	POLR2K	P53803	58 aa	Known RBP	4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	LINC01620	Q4KN68	170 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	C10orf99	Q6UWK7	81 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRAV12-2	A0A075B6T6	113 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	TRAV8-4	A0A0B4J246	113 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE12J	A6NER3	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783		A8MZ25	164 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE7	O76087	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE12F	P0CL80	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE12G	P0CL81	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE12I	P0CL82	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	GAGE4	Q13068	117 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	ZNF56	Q15929	161 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	KIF25-AS1	Q9Y6Z4	181 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783		U3KQE9	123 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	CUBN	O60494	3623 aa		4.17	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	IFITM1	P13164	125 aa		4.16	□□□□□ -1.74
RAPGEF4-215	ENST00000540783	HERV-K104	P63124	156 aa		4.16	□□□□□ -1.74

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