RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PRRC2AP48634 2157 aaKnown RBP7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 LY6LH3BQJ8 138 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 PRSS2P07478 247 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 RPL39P62891 51 aaKnown RBP7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 TMEM200BQ69YZ2 307 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 ANKRD17O75179 2603 aaKnown RBP7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 SDHAF1A6NFY7 115 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 ITPR2Q14571 2701 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 ARHGAP32A7KAX9 2087 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 CCDC168Q8NDH2 2452 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 A0A0J9YX75 114 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 TMEM86BQ8N661 226 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 TMEM141Q96I45 108 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 LITAFQ99732 161 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 NACAE9PAV3 2078 aa7.06□□□□□ -1.28
CTNNA1-243ENST00000540387 NOTCH2Q04721 2471 aa7.05□□□□□ -1.28
CTNNA1-243ENST00000540387 MGPP08493 103 aa7.05□□□□□ -1.28
CTNNA1-243ENST00000540387 IGHV4-30-2A0A087WSY4 118 aa7.05□□□□□ -1.28
CTNNA1-243ENST00000540387 M0R381 172 aa7.05□□□□□ -1.28
CTNNA1-243ENST00000540387 ADARB2-AS1A8MUL3 147 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 RS1O15537 224 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 LMO4P61968 165 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DAZ2Q13117 558 aaKnown RBP7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DAZ4Q86SG3 579 aaKnown RBP7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 LINC00311Q8N616 119 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 TIMM17AQ99595 171 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DAZ1Q9NQZ3 744 aaKnown RBP7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DAZ3Q9NR90 486 aaKnown RBP7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 ZNF580Q9UK33 172 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 IGHV4-61A0A0C4DH41 118 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 A0A1W2PRX2 142 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 ZFP36P26651 326 aaKnown RBP7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 SYNJ2BPP57105 145 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DEFB113Q30KQ7 82 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 ADAMTSL4-AS1Q5T5F5 129 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 GPHB5Q86YW7 130 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 RNF182Q8N6D2 247 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 WNK2Q9Y3S1 2297 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 TRAV12-3A0A0B4J271 114 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 TIRAPP58753 221 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 ZNF415Q09FC8 603 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 DAND5Q8N907 189 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 C9orf85Q96MD7 179 aa7.04□□□□□ -1.28
CTNNA1-243ENST00000540387 NPC2P61916 151 aa7.03□□□□□ -1.28
CTNNA1-243ENST00000540387 PRB3Q04118 309 aaPredicted RBP7.03□□□□□ -1.28
CTNNA1-243ENST00000540387 FHL2Q14192 279 aa7.03□□□□□ -1.28
CTNNA1-243ENST00000540387 TMEM61Q8N0U2 210 aa7.03□□□□□ -1.28
CTNNA1-243ENST00000540387 IGHV3OR16-10A0A075B7F0 116 aa7.02□□□□□ -1.29
CTNNA1-243ENST00000540387 LY6G5BQ8NDX9 201 aa7.02□□□□□ -1.29
CTNNA1-243ENST00000540387 V9GYY9 64 aa7.02□□□□□ -1.29
CTNNA1-243ENST00000540387 OPRPNQ99935 248 aaPredicted RBP7.02□□□□□ -1.29
CTNNA1-243ENST00000540387 A0A087WVE0 104 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 IGKV3D-7A0A0C4DH55 119 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 FAM236DA0A1B0GTK5 79 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 M0R1W7 72 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 PPP1R17O96001 155 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 FAM236CP0DP71 79 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 FLNBO75369 2602 aaKnown RBP7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV3OR16-8A0A075B7F1 116 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 USP17L23D6RBM5 183 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV1-8P0DP01 117 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 DSCR9P59020 149 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 MIAQ16674 131 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 ZFAND3Q9H8U3 227 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 C22orf24Q9Y442 160 aa7.01□□□□□ -1.29
CTNNA1-243ENST00000540387 PDZD2O15018 2839 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 F8W735 103 aaPredicted RBP7□□□□□ -1.29
CTNNA1-243ENST00000540387 MAPK1IP1LQ8NDC0 245 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 EPM2AB3EWF7 344 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 NDUFC2-KCTD14E9PQ53 114 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 BAALC-AS2P0C853 105 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV3-30-3P0DP02 117 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 POLR2KP53803 58 aaKnown RBP7□□□□□ -1.29
CTNNA1-243ENST00000540387 C9orf139Q6ZV77 190 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 LINC01561Q8N1V8 128 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 SIRPDQ9H106 197 aa7□□□□□ -1.29
CTNNA1-243ENST00000540387 A0A0J9YXV3 536 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 PRR9Q5T870 116 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 FAM223AQ8IWN6 122 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 ZANQ9Y493 2812 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 CSPG4Q6UVK1 2322 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 COX7A2LO14548 114 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 BUB3O43684 328 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 NDUFC2O95298 119 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV3-23P01764 117 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 INAFM2P0DMQ5 153 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 PSMB8P28062 276 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 PRIMA1Q86XR5 153 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 KRTAP1-3Q8IUG1 177 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 PHLDA3Q9Y5J5 127 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 CREBBPQ92793 2442 aa6.99□□□□□ -1.29
CTNNA1-243ENST00000540387 TRAV12-2A0A075B6T6 113 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 A0A096LNT2 108 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 FAM223BA6NKX1 122 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 VCYO14598 125 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 AVPP01185 164 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 S100A4P26447 101 aaKnown RBP6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 BEAN1Q3B7T3 259 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 Q6JHZ5 121 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 WFDC11Q8NEX6 87 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms