RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 TINCRA0A1B0GVN0 87 aa7.56□□□□□ -1.2
TRAF1-202ENST00000540010 LINC01619G3V211 115 aa7.56□□□□□ -1.2
TRAF1-202ENST00000540010 IGLV2-11P01706 119 aa7.56□□□□□ -1.2
TRAF1-202ENST00000540010 IGHG2P01859 326 aa7.56□□□□□ -1.2
TRAF1-202ENST00000540010 Q8N976 141 aa7.56□□□□□ -1.2
TRAF1-202ENST00000540010 UTP20O75691 2785 aaKnown RBP7.55□□□□□ -1.2
TRAF1-202ENST00000540010 PRSS47A8MTI9 375 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 CEMP1Q6PRD7 247 aaPredicted RBP7.55□□□□□ -1.2
TRAF1-202ENST00000540010 AGRNO00468 2067 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 TRBV6-1A0A0K0K1D8 114 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 CRYBA4P53673 196 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 J3QKU1 62 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 RHOHQ15669 191 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 TOMM6Q96B49 74 aa7.55□□□□□ -1.2
TRAF1-202ENST00000540010 HIST2H2BCQ6DN03 193 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 Q71RC1 249 aaPredicted RBP7.54□□□□□ -1.2
TRAF1-202ENST00000540010 C3orf56Q8N813 242 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 TMEM243Q9BU79 118 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 CRYBG3Q68DQ2 2970 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 SLURP1P55000 103 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 Q6ZS46 218 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 C2orf91Q6ZV80 131 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 TRAV12-1A0A0B4J245 112 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 URB1-AS1Q96HZ7 61 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 INAFM2P0DMQ5 153 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 IGHV4-31P0DP07 118 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 LINC01620Q4KN68 170 aa7.54□□□□□ -1.2
TRAF1-202ENST00000540010 TRAV26-1A0A087WT03 109 aa7.53□□□□□ -1.2
TRAF1-202ENST00000540010 SS18Q15532 418 aa7.53□□□□□ -1.2
TRAF1-202ENST00000540010 C5orf38Q86SI9 138 aa7.53□□□□□ -1.2
TRAF1-202ENST00000540010 ZFAND3Q9H8U3 227 aa7.53□□□□□ -1.2
TRAF1-202ENST00000540010 NOP10Q9NPE3 64 aaKnown RBP7.53□□□□□ -1.2
TRAF1-202ENST00000540010 MRPS12O15235 138 aaKnown RBP7.52□□□□□ -1.21
TRAF1-202ENST00000540010 HERVK_113P63121 156 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 H3BUA1 57 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 SOCS3O14543 225 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 ELANEP08246 267 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 BAALC-AS2P0C853 105 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 SMAD5-AS1Q9Y6J3 95 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 ACANP16112 2415 aa7.52□□□□□ -1.21
TRAF1-202ENST00000540010 LRRC75A-AS1Q8N1F1 130 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 CLEC2BQ92478 149 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 VPREB3Q9UKI3 123 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 P0DMU3 169 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 FAM231AP0DMU4 169 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 FAM231CP0DMU5 169 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 TCL1BO95988 128 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 HAMPP81172 84 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 NDUFA11Q86Y39 141 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 RNF185Q96GF1 192 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 XCL1P47992 114 aa7.51□□□□□ -1.21
TRAF1-202ENST00000540010 SMIM20Q8N5G0 67 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 DNAJC30Q96LL9 226 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 Q6ZQT7 251 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 TIMM17AQ99595 171 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 TM2D2Q9BX73 214 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 IGHV4OR15-8A0A075B7B6 117 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 A0A087WW49 117 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 SRSF2Q01130 221 aaKnown RBP7.5□□□□□ -1.21
TRAF1-202ENST00000540010 ICOSQ9Y6W8 199 aa7.5□□□□□ -1.21
TRAF1-202ENST00000540010 CRIP2P52943 208 aaPredicted RBP7.49□□□□□ -1.21
TRAF1-202ENST00000540010 CMC4P56277 68 aaPredicted RBP7.49□□□□□ -1.21
TRAF1-202ENST00000540010 C20orf203Q8NBC4 194 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 C11orf21Q9P2W6 132 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 CLPSL1A2RUU4 121 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 IGHV3-30-3P0DP02 117 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 F5H768 121 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 WFDC11Q8NEX6 87 aa7.49□□□□□ -1.21
TRAF1-202ENST00000540010 MT-ATP8P03928 68 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 C20orf173Q96LM9 149 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 OVOL2Q9BRP0 275 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 SPANXB1Q9NS25 103 aaPredicted RBP7.48□□□□□ -1.21
TRAF1-202ENST00000540010 SPANXA1Q9NS26 97 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 A0A096LNT2 108 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 GHRHP01286 108 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 ANGP03950 147 aaKnown RBP7.48□□□□□ -1.21
TRAF1-202ENST00000540010 PLA2G2AP14555 144 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 C10orf99Q6UWK7 81 aa7.48□□□□□ -1.21
TRAF1-202ENST00000540010 TRAV13-2A0A0B4J235 113 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 NEXN-AS1Q8NBZ9 246 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 Q6YL49 198 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 ESM1Q9NQ30 184 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 IGLV10-54A0A075B6I4 117 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 A0A0J9YY99 117 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 INSL3P51460 131 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 TMEM61Q8N0U2 210 aa7.47□□□□□ -1.21
TRAF1-202ENST00000540010 A0A0J9YX75 114 aa7.46□□□□□ -1.21
TRAF1-202ENST00000540010 IGLV1-40P01703 118 aa7.46□□□□□ -1.21
TRAF1-202ENST00000540010 ZFAND2AQ8N6M9 145 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 SND1-IT1Q9HBX3 110 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 IGHG4P01861 327 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 KLK9Q2XQG4 91 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 IGKV3D-7A0A0C4DH55 119 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 TEX49A0A1B0GTD5 131 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 FAM236AA0A1B0GUQ0 79 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 FAM236BA0A1B0GV22 79 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 CRLF1O75462 422 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 Q6ZUT4 128 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 SLC25A29Q8N8R3 303 aa7.46□□□□□ -1.22
TRAF1-202ENST00000540010 UBR5O95071 2799 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms