RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ODF1Q14990 250 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 MPV17L2Q567V2 206 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 COX8CQ7Z4L0 72 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 OR10G8Q8NGN5 311 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 ANAPC16Q96DE5 110 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 TMEM242Q9NWH2 141 aa7.37□□□□□ -1.23
CLSTN3-209ENST00000539982 H3BVH4 76 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 ARMS2P0C7Q2 107 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 CNBPP62633 177 aaKnown RBP7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 DNLZQ5SXM8 178 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 PRR27Q6MZM9 219 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 KRTAP26-1Q6PEX3 210 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 FAM231DQ6ZW35 169 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 OSTCQ9NRP0 149 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 SMCO4Q9NRQ5 59 aa7.36□□□□□ -1.23
CLSTN3-209ENST00000539982 PKIAP61925 76 aa7.35□□□□□ -1.23
CLSTN3-209ENST00000539982 RNASE7Q9H1E1 156 aaKnown RBP7.35□□□□□ -1.23
CLSTN3-209ENST00000539982 PRR34Q9NV39 138 aa7.35□□□□□ -1.23
CLSTN3-209ENST00000539982 IGHV3-64A0A075B6Q5 118 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 A0A0J9YXV3 536 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 C19orf71A6NCJ1 209 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 PHOX2AO14813 284 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 P01737 135 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 KRTAP10-8P60410 259 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 FAM162BQ5T6X4 162 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 CBLN2Q8IUK8 224 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 NUDT10Q8NFP7 164 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 C7orf33Q8WU49 177 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 NUDT11Q96G61 164 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 CHCHD5Q9BSY4 110 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 PLAC8Q9NZF1 115 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 PHLDA3Q9Y5J5 127 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 V9GYV3 84 aa7.34□□□□□ -1.23
CLSTN3-209ENST00000539982 hDV102S1A0JD36 115 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 GRIFINA4D1Z8 144 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 GATCO43716 136 aaKnown RBP7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 CHTF8P0CG12 524 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 CRIP1P50238 77 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 LINC00269Q8N2A0 174 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 SPACA4Q8TDM5 124 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 IMMP2LQ96T52 175 aa7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 RPP21Q9H633 154 aaKnown RBP7.33□□□□□ -1.24
CLSTN3-209ENST00000539982 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 M0R381 172 aa7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 SH2D1AO60880 128 aa7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 S100PP25815 95 aa7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 WDR73Q6P4I2 378 aa7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 KIF25-AS1Q9Y6Z4 181 aa7.32□□□□□ -1.24
CLSTN3-209ENST00000539982 SLPIP03973 132 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 RAB4BP61018 213 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 RBX1P62877 108 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 CT83Q5H943 113 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 CLPSL2Q6UWE3 100 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 ZFP82Q8N141 532 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 NEXN-AS1Q8NBZ9 246 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 OR2D3Q8NGH3 330 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 AP5S1Q9NUS5 200 aa7.31□□□□□ -1.24
CLSTN3-209ENST00000539982 SMIM27A0A1W2PRY6 76 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 A8MWL6 223 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 PRR3P79522 188 aaKnown RBP7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 TMEM97Q5BJF2 176 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 NTM-AS1Q6ZSK4 140 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 TSKUQ8WUA8 353 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 GTSF1Q8WW33 167 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 YPEL4Q96NS1 127 aa7.3□□□□□ -1.24
CLSTN3-209ENST00000539982 TRAV9-1A0A075B6T8 112 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 XKRY2A2RUG3 117 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 RPS20P60866 119 aaKnown RBP7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 REG3AQ06141 175 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 GAGE6Q13070 117 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 LINC01559Q495D7 138 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 REG3GQ6UW15 175 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 SPINK6Q6UWN8 80 aa7.29□□□□□ -1.24
CLSTN3-209ENST00000539982 IGLV10-54A0A075B6I4 117 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 TRAV8-4A0A0B4J246 113 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 FAM231BA6NCW3 169 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 COLCA2A8K830 154 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 ZNF56Q15929 161 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 BTF3L4Q96K17 158 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 GFRA4Q9GZZ7 299 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 NAT8BQ9UHF3 227 aa7.28□□□□□ -1.24
CLSTN3-209ENST00000539982 TRBV24-1A0A075B6N3 115 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 TMSB15BA0A087X1C1 80 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 TGIF2-C20orf24A0A0A6YYL0 155 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 HIGD1CA8MV81 97 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 GZMBP10144 247 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 COX6A2Q02221 97 aa7.27□□□□□ -1.25
CLSTN3-209ENST00000539982 TRBV25-1A0A075B6N4 114 aa7.26□□□□□ -1.25
CLSTN3-209ENST00000539982 CXCL1P09341 107 aa7.26□□□□□ -1.25
CLSTN3-209ENST00000539982 FOXA3P55318 350 aaPredicted RBP7.26□□□□□ -1.25
CLSTN3-209ENST00000539982 MAJINQ3KP22 176 aa7.26□□□□□ -1.25
CLSTN3-209ENST00000539982 NUP35Q8NFH5 326 aa7.26□□□□□ -1.25
CLSTN3-209ENST00000539982 F5H697 171 aa7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 RAB5AP20339 215 aa7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 SRSF9Q13242 221 aaKnown RBP eCLIP7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 IQCJQ1A5X6 159 aa7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 STPG4Q8N801 248 aa7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 FER1L6-AS1Q8NA97 138 aa7.25□□□□□ -1.25
CLSTN3-209ENST00000539982 PGLYRP4Q96LB8 373 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms