RNA–Protein interactions for RNA: ENST00000539584.5

UBE3B-209, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 2,006 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-209ENST00000539584 COL6A6A6NMZ7 2263 aa9.67□□□□□ -0.86
UBE3B-209ENST00000539584 RBMY1A1P0DJD3 496 aaKnown RBP9.66□□□□□ -0.86
UBE3B-209ENST00000539584 RBMY1CP0DJD4 496 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 CIRBPQ14011 172 aaKnown RBP9.66□□□□□ -0.86
UBE3B-209ENST00000539584 RBMY1FQ15415 496 aaKnown RBP9.66□□□□□ -0.86
UBE3B-209ENST00000539584 BEAN1Q3B7T3 259 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 UBE2WQ96B02 151 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 PEMTQ9UBM1 199 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 TRAV26-1A0A087WT03 109 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 GAGE2BQ13066 116 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 GAGE2EQ4V326 116 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 C10orf99Q6UWK7 81 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 TMEM61Q8N0U2 210 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 CLUHP3Q96NS8 147 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 GAGE2DQ9UEU5 116 aa9.66□□□□□ -0.86
UBE3B-209ENST00000539584 TRAV8-3A0A0A6YYJ7 113 aa9.65□□□□□ -0.86
UBE3B-209ENST00000539584 TRAV8-4A0A0B4J246 113 aa9.65□□□□□ -0.86
UBE3B-209ENST00000539584 FAM240AA0A1B0GVK7 77 aa9.65□□□□□ -0.86
UBE3B-209ENST00000539584 DEFB131AP59861 70 aa9.65□□□□□ -0.86
UBE3B-209ENST00000539584 ANAPC13Q9BS18 74 aa9.65□□□□□ -0.86
UBE3B-209ENST00000539584 NDUFA1O15239 70 aa9.65□□□□□ -0.87
UBE3B-209ENST00000539584 ADAMTSL4-AS1Q5T5F5 129 aa9.65□□□□□ -0.87
UBE3B-209ENST00000539584 C2orf82Q6UX34 121 aa9.65□□□□□ -0.87
UBE3B-209ENST00000539584 LST1O00453 97 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 Q6YL49 198 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 FAM19A3Q7Z5A8 133 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 PPDPFQ9H3Y8 114 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 ZNF702PQ9H963 129 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 ATRXP46100 2492 aa9.64□□□□□ -0.87
UBE3B-209ENST00000539584 IGHV3-73A0A0B4J1V6 119 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 KNCNA6PVL3 124 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 RS1O15537 224 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 IGF2RP11717 2491 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 HERVK_113P63121 156 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 DEFB121Q5J5C9 76 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 H7C423 109 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 PROK1P58294 105 aa9.63□□□□□ -0.87
UBE3B-209ENST00000539584 ADARB2-AS1A8MUL3 147 aa9.62□□□□□ -0.87
UBE3B-209ENST00000539584 HTN1P15515 57 aa9.62□□□□□ -0.87
UBE3B-209ENST00000539584 CEMP1Q6PRD7 247 aaPredicted RBP9.62□□□□□ -0.87
UBE3B-209ENST00000539584 C11orf72Q8NBR9 251 aa9.62□□□□□ -0.87
UBE3B-209ENST00000539584 BEX4Q9NWD9 120 aaPredicted RBP9.62□□□□□ -0.87
UBE3B-209ENST00000539584 CSDC2Q9Y534 153 aaKnown RBP9.62□□□□□ -0.87
UBE3B-209ENST00000539584 TEX49A0A1B0GTD5 131 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 FSHBP01225 129 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 INSP01308 110 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 DGAT2L7PQ6IED9 249 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 SPTAN1Q13813 2472 aaKnown RBP9.61□□□□□ -0.87
UBE3B-209ENST00000539584 GAGE5Q13069 117 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 GAGE6Q13070 117 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 Q8N2B8 174 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 LINC01587Q99440 93 aa9.61□□□□□ -0.87
UBE3B-209ENST00000539584 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.6□□□□□ -0.87
UBE3B-209ENST00000539584 A0A096LNT2 108 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 IGLV5-39A0A0G2JS06 123 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 IGKV2-29A2NJV5 120 aaPredicted RBP9.6□□□□□ -0.87
UBE3B-209ENST00000539584 RBMY1BA6NDE4 496 aaKnown RBP9.6□□□□□ -0.87
UBE3B-209ENST00000539584 RBMY1EA6NEQ0 496 aaKnown RBP9.6□□□□□ -0.87
UBE3B-209ENST00000539584 RBMY1DP0C7P1 496 aaKnown RBP9.6□□□□□ -0.87
UBE3B-209ENST00000539584 TTC32Q5I0X7 151 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 Q6ZSN1 163 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 TMEM101Q96IK0 257 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 CDKN2A-AS1Q9UH64 79 aa9.6□□□□□ -0.87
UBE3B-209ENST00000539584 TRBV10-1A0A0K0K1A3 114 aa9.59□□□□□ -0.87
UBE3B-209ENST00000539584 ACYP1P07311 99 aa9.59□□□□□ -0.87
UBE3B-209ENST00000539584 C4orf3Q8WVX3 66 aa9.59□□□□□ -0.87
UBE3B-209ENST00000539584 MAP6D1Q9H9H5 199 aa9.59□□□□□ -0.87
UBE3B-209ENST00000539584 AKAP6Q13023 2319 aa9.59□□□□□ -0.87
UBE3B-209ENST00000539584 ASH1LQ9NR48 2969 aaKnown RBP9.59□□□□□ -0.87
UBE3B-209ENST00000539584 NDUFV3P56181 108 aaKnown RBP9.58□□□□□ -0.88
UBE3B-209ENST00000539584 RNASE13Q5GAN3 156 aaKnown RBP9.58□□□□□ -0.88
UBE3B-209ENST00000539584 DOPEY2Q9Y3R5 2298 aa9.58□□□□□ -0.88
UBE3B-209ENST00000539584 SLURP1P55000 103 aa9.58□□□□□ -0.88
UBE3B-209ENST00000539584 PRRC2AP48634 2157 aaKnown RBP9.57□□□□□ -0.88
UBE3B-209ENST00000539584 TRAV4A0A0B4J268 109 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 TRAV25A0A0B4J276 109 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 HERV-K104P63124 156 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 DAZ2Q13117 558 aaKnown RBP9.57□□□□□ -0.88
UBE3B-209ENST00000539584 DAZ4Q86SG3 579 aaKnown RBP9.57□□□□□ -0.88
UBE3B-209ENST00000539584 LINC00308Q8TCZ7 52 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 DYNLRB2Q8TF09 96 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 DAZ3Q9NR90 486 aaKnown RBP9.57□□□□□ -0.88
UBE3B-209ENST00000539584 ZFHX3Q15911 3703 aa9.57□□□□□ -0.88
UBE3B-209ENST00000539584 C15orf53Q8NAA6 179 aa9.56□□□□□ -0.88
UBE3B-209ENST00000539584 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.56□□□□□ -0.884e-6■■□□□ 13.5
UBE3B-209ENST00000539584 IGHV3OR16-12A0A075B7B8 117 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 COX7A2LO14548 114 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 RPL36AP83881 106 aaKnown RBP9.55□□□□□ -0.88
UBE3B-209ENST00000539584 DEFB114Q30KQ6 69 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 LINC00242Q5T6M2 205 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 RPL36ALQ969Q0 106 aaKnown RBP9.55□□□□□ -0.88
UBE3B-209ENST00000539584 Q9UF83 564 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 A8MZ25 164 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 NHLRC4P0CG21 123 aaPredicted RBP9.55□□□□□ -0.88
UBE3B-209ENST00000539584 IL17DQ8TAD2 202 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 CLEC2BQ92478 149 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 CITED2Q99967 270 aaPredicted RBP9.55□□□□□ -0.88
UBE3B-209ENST00000539584 Q9H8V8 135 aa9.55□□□□□ -0.88
UBE3B-209ENST00000539584 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
UBE3B-209ENST00000539584 GAGE12JA6NER3 117 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms