RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 AMELXQ99217 191 aa9.26□□□□□ -0.93
SFSWAP-208ENST00000539506 ID1P41134 155 aa9.26□□□□□ -0.93
SFSWAP-208ENST00000539506 IGHV4OR15-8A0A075B7B6 117 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 A0A087WW49 117 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 A0A0J9YX75 114 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 ZNF876PQ49A33 203 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 IGHV3-16A0A0C4DH30 117 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 IGHV3-33P01772 117 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 TTC32Q5I0X7 151 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 CLEC2BQ92478 149 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 K7EQG2 157 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 C18orf65Q6ZTR6 163 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 Q8N1Y9 231 aa9.25□□□□□ -0.93
SFSWAP-208ENST00000539506 CCDC179H3BU77 68 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 KRTAP10-9P60411 292 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 ZNF625Q96I27 306 aaPredicted RBP9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 TNFRSF18Q9Y5U5 241 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 LINC01619G3V211 115 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 ATP6V0E2Q8NHE4 81 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 C9orf85Q96MD7 179 aa9.24□□□□□ -0.93
SFSWAP-208ENST00000539506 NIPBLQ6KC79 2804 aaeCLIP9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 JMJD1CQ15652 2540 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 IGHV3-38A0A0C4DH36 116 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 ADAMTSL4-AS1Q5T5F5 129 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 DUX3Q96PT4 197 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 ZNF702PQ9H963 129 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 ZNF22P17026 224 aaPredicted RBP9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 DSCR9P59020 149 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 TMEM263Q8WUH6 116 aaKnown RBP9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 BBC3Q96PG8 261 aaPredicted RBP9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 VCX2Q9H322 139 aa9.23□□□□□ -0.93
SFSWAP-208ENST00000539506 TRIAP1O43715 76 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 SONP18583 2426 aaKnown RBP9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 SNCGO76070 127 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 RBMY1A1P0DJD3 496 aaKnown RBP9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 RBMY1CP0DJD4 496 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 HOXD3P31249 432 aaPredicted RBP9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 GAGE2BQ13066 116 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 RBMY1FQ15415 496 aaKnown RBP9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 GAGE2EQ4V326 116 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 LYRM7Q5U5X0 104 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 GAGE2DQ9UEU5 116 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 NF1P21359 2839 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 NHLRC4P0CG21 123 aaPredicted RBP9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 DEFB136Q30KP8 78 aa9.22□□□□□ -0.93
SFSWAP-208ENST00000539506 FAM110AQ9BQ89 295 aa9.21□□□□□ -0.93
SFSWAP-208ENST00000539506 VPREB3Q9UKI3 123 aa9.21□□□□□ -0.93
SFSWAP-208ENST00000539506 TMEM223A0PJW6 202 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 M0QY20 66 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 LGALS9O00182 355 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 RHODO00212 210 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 FSHBP01225 129 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 APCP25054 2843 aa9.21□□□□□ -0.94
SFSWAP-208ENST00000539506 SNRPD3P62318 126 aaKnown RBP9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 LINC01620Q4KN68 170 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 Q6YL49 198 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 NAV2Q8IVL1 2488 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 A0A0J9YXY3 114 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 PPP1R17O96001 155 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 IGHV3-30-3P0DP02 117 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 RPL32P62910 135 aaKnown RBP9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 ODF3Q96PU9 254 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 CR1P17927 2039 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 IGKV2-29A2NJV5 120 aaPredicted RBP9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 TMEM89A2RUT3 159 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 IGHV4-31P0DP07 118 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 CD28P10747 220 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 C15orf53Q8NAA6 179 aa9.2□□□□□ -0.94
SFSWAP-208ENST00000539506 IGHV1OR15-1A0A075B7D0 117 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 TRBV27A0A0K0K1C4 114 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 SLURP1P55000 103 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 PAPPA-AS1Q5QFB9 102 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 TMEM141Q96I45 108 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 IGLV4-3A0A075B6K6 122 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 C2orf82Q6UX34 121 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 TIMM17AQ99595 171 aa9.19□□□□□ -0.94
SFSWAP-208ENST00000539506 J3QLI3 93 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 TRAV8-4A0A0B4J246 113 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 LEPROTO15243 131 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 UBE2E2Q96LR5 201 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 CHD6Q8TD26 2715 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 TRBV6-5A0A0K0K1A5 114 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 GAGE5Q13069 117 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 GAGE6Q13070 117 aa9.18□□□□□ -0.94
SFSWAP-208ENST00000539506 C20orf203Q8NBC4 194 aa9.17□□□□□ -0.94
SFSWAP-208ENST00000539506 TIMM21Q9BVV7 248 aa9.17□□□□□ -0.94
SFSWAP-208ENST00000539506 EPG5Q9HCE0 2579 aa9.17□□□□□ -0.94
SFSWAP-208ENST00000539506 NDUFV3P56181 108 aaKnown RBP9.17□□□□□ -0.94
SFSWAP-208ENST00000539506 SBSPONQ8IVN8 264 aa9.17□□□□□ -0.94
SFSWAP-208ENST00000539506 RBMY1BA6NDE4 496 aaKnown RBP9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 RBMY1EA6NEQ0 496 aaKnown RBP9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 RBMY1DP0C7P1 496 aaKnown RBP9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 ATXN8Q156A1 80 aa9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 RNF152Q8N8N0 203 aa9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 CITED2Q99967 270 aaPredicted RBP9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 Q6ZSN1 163 aa9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 CHCHD5Q9BSY4 110 aa9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 NDUFA12Q9UI09 145 aa9.16□□□□□ -0.94
SFSWAP-208ENST00000539506 TMEM262E9PQX1 116 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms