RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C15orf32Q32M92 178 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 MED13Q9UHV7 2174 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 FAM74A4Q5TZK3 123 aa9.05□□□□□ -0.96
USP3-203ENST00000538686 JMJD7-PLA2G4BH0Y9G9 81 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 NDPQ00604 133 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 VPS13AQ96RL7 3174 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 ARHGAP32A7KAX9 2087 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 MUC4Q99102 2169 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 A8MZ25 164 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 NBL1P41271 181 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 PRR15Q8IV56 129 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 FAM104AQ969W3 186 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 UBL5Q9BZL1 73 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 Q9H8V8 135 aa9.04□□□□□ -0.96
USP3-203ENST00000538686 F8WEM9 126 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 SOSTDC1Q6X4U4 206 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 FAM19A1Q7Z5A9 133 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 NBEAQ8NFP9 2946 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 SPEGQ15772 3267 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 IGLV5-39A0A0G2JS06 123 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 KLLNB2CW77 178 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 ENHOQ6UWT2 76 aa9.03□□□□□ -0.96
USP3-203ENST00000538686 IGHV3OR16-13A0A075B7E8 117 aa9.02□□□□□ -0.97
USP3-203ENST00000538686 IGHV3-74A0A0B4J1X5 117 aa9.02□□□□□ -0.97
USP3-203ENST00000538686 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.02□□□□□ -0.97
USP3-203ENST00000538686 LINC00482Q8N8I6 264 aa9.02□□□□□ -0.97
USP3-203ENST00000538686 ZNF625Q96I27 306 aaPredicted RBP9.01□□□□□ -0.97
USP3-203ENST00000538686 PLAC8L1A1L4L8 177 aa9.01□□□□□ -0.97
USP3-203ENST00000538686 HOXD3P31249 432 aaPredicted RBP9.01□□□□□ -0.97
USP3-203ENST00000538686 C9orf129Q5T035 196 aaKnown RBP9.01□□□□□ -0.97
USP3-203ENST00000538686 ORMDL1Q9P0S3 153 aa9.01□□□□□ -0.97
USP3-203ENST00000538686 LINC00474Q9P2X8 69 aa9.01□□□□□ -0.97
USP3-203ENST00000538686 LAMA1P25391 3075 aa9□□□□□ -0.97
USP3-203ENST00000538686 CLEC19AQ6UXS0 136 aa9□□□□□ -0.97
USP3-203ENST00000538686 Q6ZRU5 148 aa9□□□□□ -0.97
USP3-203ENST00000538686 CDKN2A-AS1Q9UH64 79 aa9□□□□□ -0.97
USP3-203ENST00000538686 WDFY3Q8IZQ1 3526 aa9□□□□□ -0.97
USP3-203ENST00000538686 KIAA0100Q14667 2235 aaKnown RBP9□□□□□ -0.97
USP3-203ENST00000538686 A0A087WYN8 130 aa9□□□□□ -0.97
USP3-203ENST00000538686 NCR3O14931 201 aa9□□□□□ -0.97
USP3-203ENST00000538686 CD164Q04900 197 aa9□□□□□ -0.97
USP3-203ENST00000538686 CCDC140Q96MF4 163 aa9□□□□□ -0.97
USP3-203ENST00000538686 FRYQ5TBA9 3013 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 CDH23Q9H251 3354 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 IGHV3-49A0A0A0MS15 119 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 IBA57-AS1B1ANH7 110 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 PIK3CD-AS1Q5SR53 167 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 Q8N6K4 173 aa8.99□□□□□ -0.97
USP3-203ENST00000538686 IGHV7-81A0A0B4J1V7 117 aa8.98□□□□□ -0.97
USP3-203ENST00000538686 IGHV3-16A0A0C4DH30 117 aa8.98□□□□□ -0.97
USP3-203ENST00000538686 CADP27708 2225 aa8.98□□□□□ -0.97
USP3-203ENST00000538686 PRB3Q04118 309 aaPredicted RBP8.97□□□□□ -0.97
USP3-203ENST00000538686 MIR7-3HGQ8N6C7 128 aa8.97□□□□□ -0.97
USP3-203ENST00000538686 IL17DQ8TAD2 202 aa8.97□□□□□ -0.97
USP3-203ENST00000538686 RMI2Q96E14 147 aa8.97□□□□□ -0.97
USP3-203ENST00000538686 A0A0U1RRA0 63 aa8.96□□□□□ -0.97
USP3-203ENST00000538686 LECT2O14960 151 aa8.96□□□□□ -0.98
USP3-203ENST00000538686 SNRPD3P62318 126 aaKnown RBP8.96□□□□□ -0.98
USP3-203ENST00000538686 FAM19A3Q7Z5A8 133 aa8.96□□□□□ -0.98
USP3-203ENST00000538686 WFDC9Q8NEX5 89 aa8.96□□□□□ -0.98
USP3-203ENST00000538686 SMIM11BQ8TCY0 68 aa8.96□□□□□ -0.98
USP3-203ENST00000538686 SDK1Q7Z5N4 2213 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 CCL21O00585 134 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 SS18Q15532 418 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 RNASE13Q5GAN3 156 aaKnown RBP8.95□□□□□ -0.98
USP3-203ENST00000538686 MINOS1Q5TGZ0 78 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 ODF3BA8MYP8 253 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 F6UB75 175 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 SNURFQ9Y675 71 aa8.95□□□□□ -0.98
USP3-203ENST00000538686 REV3LO60673 3130 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 MYO15AQ9UKN7 3530 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 AHCTF1Q8WYP5 2266 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 A0A1W2PRX2 142 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 IGKV2-29A2NJV5 120 aaPredicted RBP8.94□□□□□ -0.98
USP3-203ENST00000538686 ERC2-IT1O76042 136 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 MIFP14174 115 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 SEM1Q6ZVN7 128 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 CHCHD7Q9BUK0 85 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 MOB4Q9Y3A3 225 aa8.94□□□□□ -0.98
USP3-203ENST00000538686 LINC00337Q8N6G1 96 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 LINC00167Q96N53 147 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 TMEM256-PLSCR3K7ERE1 68 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 ECSCRQ19T08 205 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 ESRGQ1W209 222 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 C19orf54Q5BKX5 351 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 DYNLRB2Q8TF09 96 aa8.93□□□□□ -0.98
USP3-203ENST00000538686 SMIM1B2RUZ4 78 aa8.92□□□□□ -0.98
USP3-203ENST00000538686 SND1-IT1Q9HBX3 110 aa8.92□□□□□ -0.98
USP3-203ENST00000538686 CFAP54Q96N23 3096 aa8.92□□□□□ -0.98
USP3-203ENST00000538686 RPL36AP83881 106 aaKnown RBP8.92□□□□□ -0.98
USP3-203ENST00000538686 RPL36ALQ969Q0 106 aaKnown RBP8.92□□□□□ -0.98
USP3-203ENST00000538686 PLCE1Q9P212 2302 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 NDUFA4O00483 81 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 SAA4P35542 130 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 Q8N9W7 124 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 MINOS1-NBL1R4GNA1 71 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 ICE1Q9Y2F5 2266 aa8.91□□□□□ -0.98
USP3-203ENST00000538686 IGKV2-28A0A075B6P5 120 aa8.9□□□□□ -0.98
USP3-203ENST00000538686 TRBV7-4A0A0J9YYF1 115 aa8.9□□□□□ -0.98
USP3-203ENST00000538686 IGKV2D-28P01615 120 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 201.5 ms