RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SPANXB1Q9NS25 103 aaPredicted RBP4.82□□□□□ -1.64
USP28-206ENST00000538224 PGPEP1Q9NXJ5 209 aa4.82□□□□□ -1.64
USP28-206ENST00000538224 XCL2Q9UBD3 114 aa4.82□□□□□ -1.64
USP28-206ENST00000538224 UNC79Q9P2D8 2635 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 A0A1B0GWB2 263 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 H3BUT2 72 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 K7EP34 96 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 PF4P02776 101 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 P0DMU3 169 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 FAM231AP0DMU4 169 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 FAM231CP0DMU5 169 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 AZU1P20160 251 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 FXYD2P54710 66 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 MRPS36P82909 103 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 RPL36AP83881 106 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 DAZ2Q13117 558 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 SAMD5Q5TGI4 173 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 LYRM7Q5U5X0 104 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 Q6ZVH6 145 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 C1orf158Q8N1D5 194 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 MAPKAPK5-AS1Q8N8E1 139 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 RPL36ALQ969Q0 106 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 AMELXQ99217 191 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 TTTY13Q9BZ97 58 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 MRPL16Q9NX20 251 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 NHP2Q9NX24 153 aaKnown RBP4.81□□□□□ -1.64
USP28-206ENST00000538224 TLN2Q9Y4G6 2542 aa4.81□□□□□ -1.64
USP28-206ENST00000538224 TRGV1A0A0A0MS02 117 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 TMEM223A0PJW6 202 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 J3QQQ9 107 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 K7EQD1 137 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 INSL3P51460 131 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 SRSF9Q13242 221 aaKnown RBP eCLIP4.8□□□□□ -1.64
USP28-206ENST00000538224 DAZ4Q86SG3 579 aaKnown RBP4.8□□□□□ -1.64
USP28-206ENST00000538224 RAB37Q96AX2 223 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 DAZ3Q9NR90 486 aaKnown RBP4.8□□□□□ -1.64
USP28-206ENST00000538224 SPCS1Q9Y6A9 102 aa4.8□□□□□ -1.64
USP28-206ENST00000538224 CCDC168Q8NDH2 2452 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 IGHV3OR16-12A0A075B7B8 117 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 IGHV3-73A0A0B4J1V6 119 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 TINCRA0A1B0GVN0 87 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 ADARB2-AS1A8MUL3 147 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 TSPAN13O95857 204 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 ZNF22P17026 224 aaPredicted RBP4.79□□□□□ -1.64
USP28-206ENST00000538224 RRN3P1Q2M238 152 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 C12orf74Q32Q52 190 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 ZNRF2Q8NHG8 242 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 CHCHD7Q9BUK0 85 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 UBE2D4Q9Y2X8 147 aa4.79□□□□□ -1.64
USP28-206ENST00000538224 HELZ2Q9BYK8 2649 aaKnown RBP4.78□□□□□ -1.64
USP28-206ENST00000538224 A0A0J9YY99 117 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 GAGE12BA1L429 117 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 EMP1P54849 157 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 DGAT2L7PQ6IED9 249 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 SLC25A29Q8N8R3 303 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 PHLDA1Q8WV24 401 aaPredicted RBP4.78□□□□□ -1.64
USP28-206ENST00000538224 SIGMAR1Q99720 223 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 OVOL2Q9BRP0 275 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 CSDC2Q9Y534 153 aaKnown RBP4.78□□□□□ -1.64
USP28-206ENST00000538224 SORL1Q92673 2214 aa4.78□□□□□ -1.64
USP28-206ENST00000538224 SONP18583 2426 aaKnown RBP4.77□□□□□ -1.65
USP28-206ENST00000538224 ANK3Q12955 4377 aaKnown RBP4.77□□□□□ -1.65
USP28-206ENST00000538224 ITPR2Q14571 2701 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 TRAV26-1A0A087WT03 109 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 A0A0J9YXV3 536 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 TRBV6-4A0A1B0GX49 114 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 IGLL5B9A064 214 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 H7C423 109 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 LY6G6DO95868 133 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 UBE2D1P51668 147 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 CKS1BP61024 79 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 C9orf66Q5T8R8 295 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 Q6ZSN1 163 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 LINC00482Q8N8I6 264 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 GTSF1LQ9H1H1 148 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 GEMIN7Q9H840 131 aaKnown RBP4.77□□□□□ -1.65
USP28-206ENST00000538224 C19orf73Q9NVV2 129 aa4.77□□□□□ -1.65
USP28-206ENST00000538224 GCN1Q92616 2671 aaKnown RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 TRGV2A0A075B6R0 118 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 IGHV1-58A0A0C4DH39 117 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 IGKV2-29A2NJV5 120 aaPredicted RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 SMIM9A6NGZ8 99 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 K7ERJ3 54 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 UBE2L6O14933 153 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 RPL35AP18077 110 aaKnown RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 TIRAPP58753 221 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 TSPEAR-AS2P59090 65 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 UBE2D3P61077 147 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 UBE2D2P62837 147 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 HERVK_113P63121 156 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 RPL24P83731 157 aaKnown RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 SHISA2Q6UWI4 295 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 Q6ZTI0 123 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 Q6ZUT4 128 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 FAM19A3Q7Z5A8 133 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 CSNK1G2-AS1Q8NCQ2 148 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 DEFB104AQ8WTQ1 72 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 TMEM101Q96IK0 257 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms