RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 ACOT6Q3I5F7 207 aaPredicted RBP1.54□□□□□ -2.16
SYNE1-232ENST00000535081 LAIR2Q6ISS4 152 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 FER1L6-AS1Q8NA97 138 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 OR4B1Q8NGF8 309 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 OR8A1Q8NGG7 326 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 OR5H2Q8NGV7 314 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 OR10AC1Q8NH08 325 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 TMEM167AQ8TBQ9 72 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 LGALS14Q8TCE9 139 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 GNPNAT1Q96EK6 184 aaPredicted RBP1.54□□□□□ -2.16
SYNE1-232ENST00000535081 YPEL4Q96NS1 127 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 MGLLQ99685 303 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 PSMG3Q9BT73 122 aaPredicted RBP1.54□□□□□ -2.16
SYNE1-232ENST00000535081 ARL6Q9H0F7 186 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 OR2D2Q9H210 308 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 MS4A6AQ9H2W1 248 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 MRPL16Q9NX20 251 aaKnown RBP1.54□□□□□ -2.16
SYNE1-232ENST00000535081 BET1LQ9NYM9 111 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 HSPB8Q9UJY1 196 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 ERG28Q9UKR5 140 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 TNFSF18Q9UNG2 199 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 LINC00588Q9Y4M8 146 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 APOBP04114 4563 aaKnown RBP1.54□□□□□ -2.16
SYNE1-232ENST00000535081 A0A087WX48 190 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV5A0A0B4J249 113 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 KANTRA0A1W2PQU2 76 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 C7orf77A4D0Y5 90 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 GGTLC3B5MD39 225 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 H7BYZ3 331 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 J3QLW9 94 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BKO60814 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 PDCD6O75340 191 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 IGHV3-53P01767 116 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 ORM1P02763 201 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BJP06899 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SAA1P0DJI8 122 aaPredicted RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 DEFB130BP0DP73 79 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 DEFB130AP0DP74 79 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H1EP10412 219 aaKnown RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 PTHLHP12272 177 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 CXCL3P19876 107 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 EVI2AP22794 236 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BOP23527 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 NPPCP23582 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 ATP6V0CP27449 155 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BBP33778 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SNCAP37840 140 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 GNG4P50150 75 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SULT1A1P50225 295 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BDP58876 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BCP62807 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HSD52Q0P140 79 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF345Q14585 488 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 BATFQ16520 125 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST2H2BEQ16778 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 IAH1Q2TAA2 248 aaPredicted RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 PSMG4Q5JS54 123 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SFXN4Q6P4A7 337 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 GLIPR1L1Q6UWM5 242 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 TOMM20LQ6UXN7 152 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 Q6ZQT7 251 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 FAM231DQ6ZW35 169 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 OR8I2Q8N0Y5 310 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 C10orf126Q8N4M7 172 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 FAM24BQ8N5W8 94 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 OR13C6PQ8NH95 151 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 MRPL30Q8TCC3 161 aaKnown RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BHQ93079 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 ACY3Q96HD9 319 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 DIRAS2Q96HU8 199 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 BTF3L4Q96K17 158 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 CIB3Q96Q77 187 aaPredicted RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 METTL26Q96S19 204 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BNQ99877 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BMQ99879 126 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 UPK3BQ9BT76 320 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 HIGD2AQ9BW72 106 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 TMEM126AQ9H061 195 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 LPAR5Q9H1C0 372 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 GTSF1LQ9H1H1 148 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SND1-IT1Q9HBX3 110 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 SPANXCQ9NY87 97 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 FKBP11Q9NYL4 201 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 TAS2R8Q9NYW2 309 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 TAS2R4Q9NYW5 299 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 CACFD1Q9UGQ2 172 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 MRPS16Q9Y3D3 137 aaKnown RBP1.53□□□□□ -2.16
SYNE1-232ENST00000535081 ICOSQ9Y6W8 199 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 LY96Q9Y6Y9 160 aa1.53□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV1OR2-108A0A075B7D4 117 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 A0A087WTM6 91 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 A0A087WWC5 75 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 BORCS7-ASMTA0A0B4J1R7 106 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM235A6NFC5 223 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 KNCNA6PVL3 124 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 SNRPGP15A8MWD9 76 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 J3QR89 54 aa1.52□□□□□ -2.17
SYNE1-232ENST00000535081 GSTZ1O43708 216 aaPredicted RBP1.52□□□□□ -2.17
SYNE1-232ENST00000535081 NDUFS5O43920 106 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms