RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DAZ4Q86SG3 579 aaKnown RBP14.98□□□□□ -0.01
VPS28-212ENST00000530836 C11orf68Q9H3H3 251 aaKnown RBP14.98□□□□□ -0.01
VPS28-212ENST00000530836 DAZ3Q9NR90 486 aaKnown RBP14.98□□□□□ -0.01
VPS28-212ENST00000530836 STAB2Q8WWQ8 2551 aa14.97□□□□□ -0.01
VPS28-212ENST00000530836 DEFB4AO15263 64 aa14.97□□□□□ -0.01
VPS28-212ENST00000530836 TSHBP01222 138 aa14.97□□□□□ -0.01
VPS28-212ENST00000530836 ZNRF2Q8NHG8 242 aa14.97□□□□□ -0.01
VPS28-212ENST00000530836 HHLA3Q9XRX5 114 aa14.97□□□□□ -0.01
VPS28-212ENST00000530836 S100A12P80511 92 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 Q9UF83 564 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.95□□□□□ -0.02
VPS28-212ENST00000530836 COTL1Q14019 142 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 Q8N976 141 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 SCGB3A1Q96QR1 104 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 PRO0255Q9UI72 69 aa14.95□□□□□ -0.02
VPS28-212ENST00000530836 ATP5G1P05496 136 aa14.94□□□□□ -0.02
VPS28-212ENST00000530836 UBE2D3P61077 147 aa14.94□□□□□ -0.02
VPS28-212ENST00000530836 UBE2D2P62837 147 aa14.94□□□□□ -0.02
VPS28-212ENST00000530836 ERASQ7Z444 233 aa14.94□□□□□ -0.02
VPS28-212ENST00000530836 C20orf203Q8NBC4 194 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 CELA1Q9UNI1 258 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 GAGE12JA6NER3 117 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 CRYBA4P53673 196 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 GAGE1Q13065 139 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 GAGE4Q13068 117 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 GAGE5Q13069 117 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 GAGE13Q4V321 117 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 LINC01545Q5VT33 79 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 TEX43Q6ZNM6 134 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 TMEM141Q96I45 108 aa14.92□□□□□ -0.02
VPS28-212ENST00000530836 LGALS9CQ6DKI2 356 aa14.91□□□□□ -0.02
VPS28-212ENST00000530836 Q6ZN92 141 aa14.91□□□□□ -0.02
VPS28-212ENST00000530836 TIMM17AQ99595 171 aa14.91□□□□□ -0.02
VPS28-212ENST00000530836 PRSS1P07477 247 aa14.9□□□□□ -0.02
VPS28-212ENST00000530836 PHLDA1Q8WV24 401 aaPredicted RBP14.9□□□□□ -0.02
VPS28-212ENST00000530836 GTSF1LQ9H1H1 148 aa14.9□□□□□ -0.02
VPS28-212ENST00000530836 H0Y8G0 127 aa14.89□□□□□ -0.03
VPS28-212ENST00000530836 TMEM97Q5BJF2 176 aa14.89□□□□□ -0.03
VPS28-212ENST00000530836 CDPF1Q6NVV7 123 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 IGHV3-38A0A0C4DH36 116 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 IGIPA6NJ69 53 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 NPSP0C0P6 89 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 LINC00694P0DN24 101 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 WWC2-AS2Q96NR7 200 aa14.88□□□□□ -0.03
VPS28-212ENST00000530836 TRAV12-1A0A0B4J245 112 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 A0A0J9YWU9 116 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 PAX4O43316 350 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 DEFB104AQ8WTQ1 72 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 CHCHD7Q9BUK0 85 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 PYGO1Q9Y3Y4 419 aa14.87□□□□□ -0.03
VPS28-212ENST00000530836 RPL39P62891 51 aaKnown RBP14.86□□□□□ -0.03
VPS28-212ENST00000530836 PAPPA-AS1Q5QFB9 102 aa14.86□□□□□ -0.03
VPS28-212ENST00000530836 LOC100131303A0A0U1RQF7 123 aa14.85□□□□□ -0.03
VPS28-212ENST00000530836 GYPEP15421 78 aa14.85□□□□□ -0.03
VPS28-212ENST00000530836 SMAGPQ0VAQ4 97 aa14.85□□□□□ -0.03
VPS28-212ENST00000530836 C12orf74Q32Q52 190 aa14.85□□□□□ -0.03
VPS28-212ENST00000530836 VAMP8Q9BV40 100 aa14.85□□□□□ -0.03
VPS28-212ENST00000530836 F5H768 121 aa14.84□□□□□ -0.03
VPS28-212ENST00000530836 SPANXA1Q9NS26 97 aa14.84□□□□□ -0.03
VPS28-212ENST00000530836 A0A087WX48 190 aa14.83□□□□□ -0.04
VPS28-212ENST00000530836 ODF1Q14990 250 aa14.83□□□□□ -0.04
VPS28-212ENST00000530836 BAALCQ8WXS3 180 aa14.83□□□□□ -0.04
VPS28-212ENST00000530836 H7C423 109 aa14.82□□□□□ -0.04
VPS28-212ENST00000530836 SH2D6Q7Z4S9 175 aa14.82□□□□□ -0.04
VPS28-212ENST00000530836 ATP6V0E2Q8NHE4 81 aa14.82□□□□□ -0.04
VPS28-212ENST00000530836 TRBV25-1A0A075B6N4 114 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 TRAV9-2A0A087WT02 112 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 TRAV26-1A0A087WT03 109 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 TIMM21Q9BVV7 248 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 PMVKQ15126 192 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 NTM-AS1Q6ZSK4 140 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 C11orf45Q8TAV5 145 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 VSIG2Q96IQ7 327 aa14.81□□□□□ -0.04
VPS28-212ENST00000530836 HSBP1L1C9JCN9 74 aa14.8□□□□□ -0.04
VPS28-212ENST00000530836 H3BNG1 76 aa14.8□□□□□ -0.04
VPS28-212ENST00000530836 ATOH7Q8N100 152 aa14.8□□□□□ -0.04
VPS28-212ENST00000530836 UBE2D4Q9Y2X8 147 aa14.8□□□□□ -0.04
VPS28-212ENST00000530836 HTN3P15516 51 aa14.79□□□□□ -0.04
VPS28-212ENST00000530836 MRPL23Q16540 153 aaKnown RBP14.79□□□□□ -0.04
VPS28-212ENST00000530836 PMCHL2Q9BQD1 86 aa14.79□□□□□ -0.04
VPS28-212ENST00000530836 TMEM243Q9BU79 118 aa14.79□□□□□ -0.04
VPS28-212ENST00000530836 TRBV6-8A0A0A6YYG3 113 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 F8VRH5 84 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 TSTD3H0UI37 97 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 DPM2O94777 84 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 PLNP26678 52 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 PKIAP61925 76 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 ZNF664Q8N3J9 261 aa14.78□□□□□ -0.04
VPS28-212ENST00000530836 CSDC2Q9Y534 153 aaKnown RBP14.78□□□□□ -0.04
VPS28-212ENST00000530836 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.77□□□□□ -0.04
VPS28-212ENST00000530836 IGKV2-29A2NJV5 120 aaPredicted RBP14.77□□□□□ -0.04
VPS28-212ENST00000530836 PRSS29PA6NIE9 313 aa14.77□□□□□ -0.04
VPS28-212ENST00000530836 MRPL52Q86TS9 123 aaKnown RBP14.77□□□□□ -0.04
VPS28-212ENST00000530836 PAM16Q9Y3D7 125 aa14.77□□□□□ -0.04
VPS28-212ENST00000530836 CHTOPQ9Y3Y2 248 aaKnown RBP14.77□□□□□ -0.04
VPS28-212ENST00000530836 IGLV4-3A0A075B6K6 122 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 A0A0J9YY99 117 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 UBE2L6O14933 153 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 IGKCP01834 107 aa14.77□□□□□ -0.05
VPS28-212ENST00000530836 VCX2Q9H322 139 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 236.6 ms