RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 C20orf203Q8NBC4 194 aa8.38□□□□□ -1.07
CPSF1-204ENST00000529288 DPH3P1Q9H4G8 78 aa8.38□□□□□ -1.07
CPSF1-204ENST00000529288 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.38□□□□□ -1.07
CPSF1-204ENST00000529288 IGKV3OR2-268A0A0C4DH90 116 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 AMTP48728 403 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 TEX261Q6UWH6 196 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 CLRN3Q8NCR9 226 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 NUDT10Q8NFP7 164 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 NUDT11Q96G61 164 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 FAM210AQ96ND0 272 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 GFRA4Q9GZZ7 299 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 NIT2Q9NQR4 276 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 BIN3Q9NQY0 253 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 AP5S1Q9NUS5 200 aa8.37□□□□□ -1.07
CPSF1-204ENST00000529288 PANO1I0J062 215 aa8.36□□□□□ -1.07
CPSF1-204ENST00000529288 NDUFS6O75380 124 aaKnown RBP8.36□□□□□ -1.07
CPSF1-204ENST00000529288 COTL1Q14019 142 aa8.36□□□□□ -1.07
CPSF1-204ENST00000529288 OCC1Q8TAD7 63 aa8.36□□□□□ -1.07
CPSF1-204ENST00000529288 LRP1Q07954 4544 aaKnown RBP8.36□□□□□ -1.07
CPSF1-204ENST00000529288 TRAV8-4A0A0B4J246 113 aa8.35□□□□□ -1.07
CPSF1-204ENST00000529288 OXTP01178 125 aa8.35□□□□□ -1.07
CPSF1-204ENST00000529288 WDR73Q6P4I2 378 aa8.35□□□□□ -1.07
CPSF1-204ENST00000529288 SDIM1Q6ZPB5 146 aa8.35□□□□□ -1.07
CPSF1-204ENST00000529288 FAT3Q8TDW7 4589 aa8.35□□□□□ -1.07
CPSF1-204ENST00000529288 TRAV26-2A0A0B4J265 109 aa8.34□□□□□ -1.07
CPSF1-204ENST00000529288 A0A1B0GUV1 79 aa8.34□□□□□ -1.07
CPSF1-204ENST00000529288 SRP19P09132 144 aaKnown RBP8.34□□□□□ -1.07
CPSF1-204ENST00000529288 SERTAD4-AS1Q5TG53 156 aa8.34□□□□□ -1.07
CPSF1-204ENST00000529288 RNASE7Q9H1E1 156 aaKnown RBP8.34□□□□□ -1.07
CPSF1-204ENST00000529288 RPP21Q9H633 154 aaKnown RBP8.34□□□□□ -1.07
CPSF1-204ENST00000529288 IGHV3-64A0A075B6Q5 118 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.33□□□□□ -1.08
CPSF1-204ENST00000529288 GAGE12HA6NDE8 117 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 C9JQL5 133 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 CTRLP40313 264 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 HNRNPA3P51991 378 aaKnown RBP8.33□□□□□ -1.08
CPSF1-204ENST00000529288 AMMECR1LQ6DCA0 310 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 SMIM15Q7Z3B0 74 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 GATD1Q8NB37 220 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 PGLYRP4Q96LB8 373 aa8.33□□□□□ -1.08
CPSF1-204ENST00000529288 CHTF8P0CG12 524 aa8.32□□□□□ -1.08
CPSF1-204ENST00000529288 SRSF3P84103 164 aaKnown RBP8.32□□□□□ -1.08
CPSF1-204ENST00000529288 RNASEKQ6P5S7 137 aaKnown RBP8.32□□□□□ -1.08
CPSF1-204ENST00000529288 CNFNQ9BYD5 112 aa8.32□□□□□ -1.08
CPSF1-204ENST00000529288 EIF5A2Q9GZV4 153 aaKnown RBP8.32□□□□□ -1.08
CPSF1-204ENST00000529288 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.31□□□□□ -1.08
CPSF1-204ENST00000529288 IGKV2-29A2NJV5 120 aaPredicted RBP8.31□□□□□ -1.08
CPSF1-204ENST00000529288 SLPIP03973 132 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 CEBPGP53567 150 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 FOXA3P55318 350 aaPredicted RBP8.31□□□□□ -1.08
CPSF1-204ENST00000529288 CNBPP62633 177 aaKnown RBP8.31□□□□□ -1.08
CPSF1-204ENST00000529288 HIGD2BQ4VC39 106 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 FAM231DQ6ZW35 169 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 LINC01551Q86U37 167 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 GTSF1Q8WW33 167 aa8.31□□□□□ -1.08
CPSF1-204ENST00000529288 RPL39LQ96EH5 51 aaKnown RBP8.31□□□□□ -1.08
CPSF1-204ENST00000529288 UBR4Q5T4S7 5183 aa8.3□□□□□ -1.08
CPSF1-204ENST00000529288 PKHD1L1Q86WI1 4243 aa8.3□□□□□ -1.08
CPSF1-204ENST00000529288 GATCO43716 136 aaKnown RBP8.3□□□□□ -1.08
CPSF1-204ENST00000529288 CFAP161Q6P656 301 aa8.3□□□□□ -1.08
CPSF1-204ENST00000529288 SMIM7Q9BQ49 75 aa8.3□□□□□ -1.08
CPSF1-204ENST00000529288 A0A087WYN8 130 aa8.29□□□□□ -1.08
CPSF1-204ENST00000529288 APCSP02743 223 aa8.29□□□□□ -1.08
CPSF1-204ENST00000529288 PMCHP20382 165 aa8.29□□□□□ -1.08
CPSF1-204ENST00000529288 PLA2G2DQ9UNK4 145 aa8.29□□□□□ -1.08
CPSF1-204ENST00000529288 ZNF727A8MUV8 499 aa8.28□□□□□ -1.08
CPSF1-204ENST00000529288 CHCHD10Q8WYQ3 142 aaPredicted RBP8.28□□□□□ -1.08
CPSF1-204ENST00000529288 IGKV2-24A0A0C4DH68 120 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 FGF6P10767 208 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 RPS10P46783 165 aaKnown RBP8.27□□□□□ -1.09
CPSF1-204ENST00000529288 COX6A2Q02221 97 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 CT83Q5H943 113 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 C15orf56Q8N910 161 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 BORCS7Q96B45 105 aa8.27□□□□□ -1.09
CPSF1-204ENST00000529288 HMCN2Q8NDA2 5059 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 SDHAF1A6NFY7 115 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 A8MWL6 223 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 NCR2O95944 276 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 MAJINQ3KP22 176 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 SPACA4Q8TDM5 124 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 ISOC2Q96AB3 205 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 TMEM101Q96IK0 257 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 BTF3L4Q96K17 158 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 OSTCQ9NRP0 149 aa8.26□□□□□ -1.09
CPSF1-204ENST00000529288 XCL1P47992 114 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 RPL23P62829 140 aaKnown RBP8.25□□□□□ -1.09
CPSF1-204ENST00000529288 CIRBPQ14011 172 aaKnown RBP8.25□□□□□ -1.09
CPSF1-204ENST00000529288 PRSS3P2Q8NHM4 247 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 C7orf33Q8WU49 177 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 RNF185Q96GF1 192 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 SMDT1Q9H4I9 107 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 V9GYV3 84 aa8.25□□□□□ -1.09
CPSF1-204ENST00000529288 I3L3M4 83 aa8.24□□□□□ -1.09
CPSF1-204ENST00000529288 PHOX2AO14813 284 aa8.24□□□□□ -1.09
CPSF1-204ENST00000529288 FAM74A3Q4VXF1 159 aa8.24□□□□□ -1.09
CPSF1-204ENST00000529288 ST20Q9HBF5 79 aa8.24□□□□□ -1.09
CPSF1-204ENST00000529288 TMEM242Q9NWH2 141 aa8.24□□□□□ -1.09
CPSF1-204ENST00000529288 H7C423 109 aa8.23□□□□□ -1.09
CPSF1-204ENST00000529288 GAS8-AS1O95177 125 aa8.23□□□□□ -1.09
CPSF1-204ENST00000529288 IFITM2Q01629 132 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms