RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 PHLDA3Q9Y5J5 127 aa3.57□□□□□ -1.84
CD44-230ENST00000528922 NIPBLQ6KC79 2804 aaeCLIP3.57□□□□□ -1.84
CD44-230ENST00000528922 MYMXA0A1B0GTQ4 84 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 TMEM89A2RUT3 159 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 E9PLD3 99 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 UQCRFS1P47985 274 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 CRYBA4P53673 196 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 SMAGPQ0VAQ4 97 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 C11orf71Q6IPW1 123 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 CLEC2AQ6UVW9 174 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 COPS9Q8WXC6 57 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 ODF3Q96PU9 254 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 SCGB3A1Q96QR1 104 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 SIRPDQ9H106 197 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 HHLA3Q9XRX5 114 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 CYSLTR1Q9Y271 337 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 UFC1Q9Y3C8 167 aa3.56□□□□□ -1.84
CD44-230ENST00000528922 IGLV2-18A0A075B6J9 118 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 TRAV41A0A0B4J266 112 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 TRAV40A0A0B4J280 105 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 A0A1B0GWB2 263 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 H3BMG7 143 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 K7EMT4 169 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 NCR2O95944 276 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 IGF1P05019 195 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 CD24P25063 80 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 Q1RN00 199 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 LINC00242Q5T6M2 205 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 FAM159AQ6UWV7 190 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 SCGB1D4Q6XE38 83 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 APRG1Q8IVJ8 170 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 DYNAPQ8N1N2 210 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 LINC01560Q8TB33 94 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 DLX4Q92988 240 aaPredicted RBP3.55□□□□□ -1.84
CD44-230ENST00000528922 TIMM17AQ99595 171 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 AGPAT4-IT1Q9H0P7 198 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 SPANXB1Q9NS25 103 aaPredicted RBP3.55□□□□□ -1.84
CD44-230ENST00000528922 NHP2Q9NX24 153 aaKnown RBP3.55□□□□□ -1.84
CD44-230ENST00000528922 TP73-AS1Q9UF72 201 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 ABCA4P78363 2273 aa3.55□□□□□ -1.84
CD44-230ENST00000528922 AKAP9Q99996 3911 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 AGRNO00468 2067 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.54□□□□□ -1.84
CD44-230ENST00000528922 IGLL5B9A064 214 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 M0QXV9 152 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 NPFFO15130 113 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 DUSP14O95147 198 aaKnown RBP3.54□□□□□ -1.84
CD44-230ENST00000528922 ZNF80P51504 273 aaPredicted RBP3.54□□□□□ -1.84
CD44-230ENST00000528922 RHOHQ15669 191 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 RRN3P1Q2M238 152 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 C12orf74Q32Q52 190 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 C2orf66Q6UXQ4 117 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 CLEC19AQ6UXS0 136 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 Q6ZVH6 145 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 LHFPL4Q7Z7J7 247 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 RAB37Q96AX2 223 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 C18orf15Q96N68 181 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 MRPL35Q9NZE8 188 aaKnown RBP3.54□□□□□ -1.84
CD44-230ENST00000528922 STAB1Q9NY15 2570 aa3.54□□□□□ -1.84
CD44-230ENST00000528922 PRRC2CQ9Y520 2896 aaKnown RBP3.54□□□□□ -1.84
CD44-230ENST00000528922 IGHV7-4-1A0A0J9YVY3 117 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 TRBV6-5A0A0K0K1A5 114 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 C11orf86A6NJI1 115 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 TMEM238C9JI98 176 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 LYNX1G3V0Z9 82 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 IGHV1-69P01742 117 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 IGHG4P01861 327 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 TRGV3P03979 118 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 COX6CP09669 75 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 LYNX1P0DP58 116 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 SNRPD3P62318 126 aaKnown RBP3.53□□□□□ -1.84
CD44-230ENST00000528922 LOXL1Q08397 574 aaPredicted RBP3.53□□□□□ -1.84
CD44-230ENST00000528922 ERCC8Q13216 396 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 PMVKQ15126 192 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 PCP2Q8IVA1 136 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 C5orf56Q8N8D9 126 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 KLHL30-AS1Q8NEE0 82 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 Q8TAT8 98 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 ITLN2Q8WWU7 325 aaPredicted RBP3.53□□□□□ -1.84
CD44-230ENST00000528922 PLEKHB2Q96CS7 222 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 DAZ1Q9NQZ3 744 aaKnown RBP3.53□□□□□ -1.84
CD44-230ENST00000528922 MRPL16Q9NX20 251 aaKnown RBP3.53□□□□□ -1.84
CD44-230ENST00000528922 APCP25054 2843 aa3.53□□□□□ -1.84
CD44-230ENST00000528922 NBASA2RRP1 2371 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 ZNF815PA8K554 130 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 SMKR1H3BMG3 65 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 H3BVH4 76 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 IGHG2P01859 326 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 LGALS3P17931 250 aaKnown RBP3.52□□□□□ -1.85
CD44-230ENST00000528922 HLA-DMBP28068 263 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 SAA4P35542 130 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 FXYD2P54710 66 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 DLX1P56177 255 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 NDPQ00604 133 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 KLRD1Q13241 179 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 GPHB5Q86YW7 130 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 TEX29Q8N6K0 151 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 YAE1D1Q9NRH1 226 aa3.52□□□□□ -1.85
CD44-230ENST00000528922 BSNQ9UPA5 3926 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms