RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 LRCOL1A6NCL2 159 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 J3QRE1 110 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 M0R135 149 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 SNRPD3P62318 126 aaKnown RBP3.34□□□□□ -1.87
PCF11-202ENST00000528336 C6orf52Q5T4I8 152 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 FOXI2Q6ZQN5 318 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 C2orf91Q6ZV80 131 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 Q8N2B8 174 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 OR4B1Q8NGF8 309 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 ZNF714Q96N38 554 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 AMELYQ99218 206 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 SLC35B3Q9H1N7 401 aa3.34□□□□□ -1.87
PCF11-202ENST00000528336 METTL1Q9UBP6 276 aaKnown RBP3.34□□□□□ -1.87
PCF11-202ENST00000528336 ANKRD17O75179 2603 aaKnown RBP3.33□□□□□ -1.88
PCF11-202ENST00000528336 TEX15Q9BXT5 2789 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 MDFIC2A0A1B0GVS7 189 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 C17orf98A8MV24 154 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 SYNGR2O43760 224 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 PIPP12273 146 aaPredicted RBP3.33□□□□□ -1.88
PCF11-202ENST00000528336 LINC01545Q5VT33 79 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 SOSTDC1Q6X4U4 206 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 C5orf17Q8NAS9 161 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 KLF14Q8TD94 323 aaPredicted RBP3.33□□□□□ -1.88
PCF11-202ENST00000528336 CCL19Q99731 98 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 Q9H521 79 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 SCP2D1Q9UJQ7 156 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 RTTNQ86VV8 2226 aa3.33□□□□□ -1.88
PCF11-202ENST00000528336 PDZD2O15018 2839 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 CSMD2Q7Z408 3487 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 A0A0B4J2C4 111 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 H3BQ85 93 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 M0R233 179 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 PITX3O75364 302 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 SUPT4H1P63272 117 aaKnown RBP3.32□□□□□ -1.88
PCF11-202ENST00000528336 CATR1Q13166 79 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 DEFB113Q30KQ7 82 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 FAM229BQ4G0N7 80 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 PP632Q6XCG6 107 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 C1orf64Q8NEQ6 169 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 AGPAT4-IT1Q9H0P7 198 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 DYNLRB1Q9NP97 96 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 LSM2Q9Y333 95 aaKnown RBP3.32□□□□□ -1.88
PCF11-202ENST00000528336 R4GMQ9 66 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 CREBBPQ92793 2442 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 MYO9AB2RTY4 2548 aa3.32□□□□□ -1.88
PCF11-202ENST00000528336 NBPF19A0A087WUL8 3843 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 OTOGQ6ZRI0 2925 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 USF3Q68DE3 2245 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 IQCF6A8MYZ5 107 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 J3QLW9 94 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 IGLV3-1P01715 115 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 MT-ND6P03923 174 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 CD3DP04234 171 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 NFYAP23511 347 aaPredicted RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 COL8A2P25067 703 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 RPL28P46779 137 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 EFNA4P52798 201 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 LSM3P62310 102 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 MRPS36P82909 103 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 OR2T2Q6IF00 324 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 KCNRGQ8N5I3 272 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 TTC9CQ8N5M4 171 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 FAM216BQ8N7L0 139 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 MRPS24Q96EL2 167 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 IMMP2LQ96T52 175 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 TTTY10Q9BZA0 68 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 NAA60Q9H7X0 242 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 NOP16Q9Y3C1 178 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 TPRKBQ9Y3C4 175 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 V9GYS6 101 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 CACNA1DQ01668 2161 aa3.31□□□□□ -1.88
PCF11-202ENST00000528336 HEATR1Q9H583 2144 aaKnown RBP3.31□□□□□ -1.88
PCF11-202ENST00000528336 CSMD1Q96PZ7 3565 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.3□□□□□ -1.88
PCF11-202ENST00000528336 H3BT86 120 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 SDCBPO00560 298 aaPredicted RBP3.3□□□□□ -1.88
PCF11-202ENST00000528336 MRPS14O60783 128 aaKnown RBP3.3□□□□□ -1.88
PCF11-202ENST00000528336 IGHV3-53P01767 116 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 IGLV7-43P04211 117 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 ZNF816Q0VGE8 651 aaPredicted RBP3.3□□□□□ -1.88
PCF11-202ENST00000528336 CDK5R1Q15078 307 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 GINS4Q9BRT9 223 aa3.3□□□□□ -1.88
PCF11-202ENST00000528336 MAP1AP78559 2803 aaPredicted RBP3.3□□□□□ -1.88
PCF11-202ENST00000528336 LOC107986453A0A1B0GWG9 222 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 TMEM235A6NFC5 223 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 H3BPC8 53 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 CREBL2O60519 120 aaPredicted RBP3.29□□□□□ -1.88
PCF11-202ENST00000528336 CD2P06729 351 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 GZMBP10144 247 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 TPT1P13693 172 aaKnown RBP3.29□□□□□ -1.88
PCF11-202ENST00000528336 S100A10P60903 97 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 CCL8P80075 99 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 ZNF90Q03938 601 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 KLRD1Q13241 179 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 Q56UQ5 140 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 XAF1Q6GPH4 301 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 Q6ZUT4 128 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 OR5AS1Q8N127 324 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 ST20-AS1Q8NBB2 130 aa3.29□□□□□ -1.88
PCF11-202ENST00000528336 OR5AK2Q8NH90 309 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms