RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 COL5A1-AS1Q5SY13 56 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 PLAC8L1A1L4L8 177 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 LINC01549A6NIU2 74 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 NACAE9PAV3 2078 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 K7EIL1 84 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 PRB2P02812 416 aaPredicted RBP13.49□□□□□ -0.25
VPS28-207ENST00000526977 TCTAP57738 103 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 OVOL2Q9BRP0 275 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 TRGV1A0A0A0MS02 117 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 IGHV3-53P01767 116 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 MIFP14174 115 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 RHOHQ15669 191 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 C2orf91Q6ZV80 131 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 NOP10Q9NPE3 64 aaKnown RBP13.47□□□□□ -0.25
VPS28-207ENST00000526977 F8VRH5 84 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 CHTOPQ9Y3Y2 248 aaKnown RBP13.47□□□□□ -0.25
VPS28-207ENST00000526977 TNFRSF18Q9Y5U5 241 aa13.47□□□□□ -0.25
VPS28-207ENST00000526977 PRSS29PA6NIE9 313 aa13.46□□□□□ -0.25
VPS28-207ENST00000526977 MPV17L2Q567V2 206 aa13.46□□□□□ -0.25
VPS28-207ENST00000526977 DEFB121Q5J5C9 76 aa13.46□□□□□ -0.25
VPS28-207ENST00000526977 BOD1L2Q8IYS8 172 aa13.46□□□□□ -0.25
VPS28-207ENST00000526977 PLNP26678 52 aa13.46□□□□□ -0.26
VPS28-207ENST00000526977 ZC2HC1BQ5TFG8 222 aa13.46□□□□□ -0.26
VPS28-207ENST00000526977 Q6ZTI0 123 aa13.46□□□□□ -0.26
VPS28-207ENST00000526977 TMEM141Q96I45 108 aa13.46□□□□□ -0.26
VPS28-207ENST00000526977 OR4C5Q8NGB2 326 aa13.45□□□□□ -0.26
VPS28-207ENST00000526977 TIMM17AQ99595 171 aa13.44□□□□□ -0.26
VPS28-207ENST00000526977 IGKV2D-26A0A0A0MRZ7 120 aa13.44□□□□□ -0.26
VPS28-207ENST00000526977 NMUP48645 174 aa13.44□□□□□ -0.26
VPS28-207ENST00000526977 PCP2Q8IVA1 136 aa13.44□□□□□ -0.26
VPS28-207ENST00000526977 C20orf203Q8NBC4 194 aa13.44□□□□□ -0.26
VPS28-207ENST00000526977 NBEAL2Q6ZNJ1 2754 aa13.43□□□□□ -0.26
VPS28-207ENST00000526977 EMP1P54849 157 aa13.43□□□□□ -0.26
VPS28-207ENST00000526977 ZNF479Q96JC4 524 aa13.43□□□□□ -0.26
VPS28-207ENST00000526977 DNAJC30Q96LL9 226 aa13.43□□□□□ -0.26
VPS28-207ENST00000526977 DLEU1O43261 78 aa13.42□□□□□ -0.26
VPS28-207ENST00000526977 IGHV4-28A0A0C4DH34 117 aa13.42□□□□□ -0.26
VPS28-207ENST00000526977 Q8NAQ8 132 aa13.42□□□□□ -0.26
VPS28-207ENST00000526977 DNHD1Q96M86 4753 aa13.41□□□□□ -0.26
VPS28-207ENST00000526977 PMVKQ15126 192 aa13.41□□□□□ -0.26
VPS28-207ENST00000526977 BVES-AS1Q5T3Y7 98 aa13.41□□□□□ -0.26
VPS28-207ENST00000526977 SBSPONQ8IVN8 264 aa13.41□□□□□ -0.26
VPS28-207ENST00000526977 CST9LQ9H4G1 147 aa13.41□□□□□ -0.26
VPS28-207ENST00000526977 LYRM9A8MSI8 78 aa13.4□□□□□ -0.26
VPS28-207ENST00000526977 TRAV4A0A0B4J268 109 aa13.4□□□□□ -0.26
VPS28-207ENST00000526977 CIDEAO60543 219 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 OPRPNQ99935 248 aaPredicted RBP13.39□□□□□ -0.27
VPS28-207ENST00000526977 TRGV2A0A075B6R0 118 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 GAGE12BA1L429 117 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 SIVA1O15304 175 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 GAGE7O76087 117 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 GAGE12FP0CL80 117 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 GAGE12GP0CL81 117 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 GAGE12IP0CL82 117 aa13.39□□□□□ -0.27
VPS28-207ENST00000526977 LINC00612Q8N6U2 182 aa13.38□□□□□ -0.27
VPS28-207ENST00000526977 LINC00469Q8N7U9 141 aa13.38□□□□□ -0.27
VPS28-207ENST00000526977 SPATA25Q9BR10 227 aa13.38□□□□□ -0.27
VPS28-207ENST00000526977 TTTY13Q9BZ97 58 aa13.38□□□□□ -0.27
VPS28-207ENST00000526977 IGLV4-69A0A075B6H9 119 aa13.37□□□□□ -0.27
VPS28-207ENST00000526977 FAM222AQ5U5X8 452 aa13.37□□□□□ -0.27
VPS28-207ENST00000526977 TM2D3Q9BRN9 247 aa13.37□□□□□ -0.27
VPS28-207ENST00000526977 RETNQ9HD89 108 aa13.37□□□□□ -0.27
VPS28-207ENST00000526977 IGHV3-38A0A0C4DH36 116 aa13.36□□□□□ -0.27
VPS28-207ENST00000526977 DEFB4AO15263 64 aa13.36□□□□□ -0.27
VPS28-207ENST00000526977 ZNF25P17030 456 aaPredicted RBP13.36□□□□□ -0.27
VPS28-207ENST00000526977 MRAPQ8TCY5 172 aa13.36□□□□□ -0.27
VPS28-207ENST00000526977 PHLDA1Q8WV24 401 aaPredicted RBP13.36□□□□□ -0.27
VPS28-207ENST00000526977 CHCHD7Q9BUK0 85 aa13.36□□□□□ -0.27
VPS28-207ENST00000526977 ZNRF2Q8NHG8 242 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 TEX48A0A1B0GUV7 120 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 SPART-AS1P0CW21 52 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 DEFB130BP0DP73 79 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 DEFB130AP0DP74 79 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 PYGO1Q9Y3Y4 419 aa13.35□□□□□ -0.27
VPS28-207ENST00000526977 IGLV4-3A0A075B6K6 122 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 TRBV7-3A0A075B6L6 115 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 TRBV10-1A0A0K0K1A3 114 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 C11orf86A6NJI1 115 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 TMEM97Q5BJF2 176 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 Q6ZVH6 145 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 MAPKAPK5-AS1Q8N8E1 139 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 SLC25A29Q8N8R3 303 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 K7EQD1 137 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 PAPPA-AS1Q5QFB9 102 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 FAM104AQ969W3 186 aa13.34□□□□□ -0.27
VPS28-207ENST00000526977 COTL1Q14019 142 aa13.33□□□□□ -0.28
VPS28-207ENST00000526977 C11orf68Q9H3H3 251 aaKnown RBP13.33□□□□□ -0.28
VPS28-207ENST00000526977 TRAV8-6A0A0B4J262 113 aa13.32□□□□□ -0.28
VPS28-207ENST00000526977 VCX2Q9H322 139 aa13.32□□□□□ -0.28
VPS28-207ENST00000526977 RPL36AP83881 106 aaKnown RBP13.31□□□□□ -0.28
VPS28-207ENST00000526977 CEMP1Q6PRD7 247 aaPredicted RBP13.31□□□□□ -0.28
VPS28-207ENST00000526977 RPL36ALQ969Q0 106 aaKnown RBP13.31□□□□□ -0.28
VPS28-207ENST00000526977 COX11Q9Y6N1 276 aa13.31□□□□□ -0.28
VPS28-207ENST00000526977 E9PLD3 99 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 DAD1P61803 113 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 HSD52Q0P140 79 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 HIGD1BQ9P298 99 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 TRBV25-1A0A075B6N4 114 aa13.3□□□□□ -0.28
VPS28-207ENST00000526977 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.3□□□□□ -0.28
VPS28-207ENST00000526977 IGKV2-29A2NJV5 120 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms