RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 IGHV3-38A0A0C4DH36 116 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 K7EP13 123 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 DNAH10OSP0CZ25 163 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 C10orf126Q8N4M7 172 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 GATD1Q8NB37 220 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 MRAP2Q96G30 205 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 TRAPPC1Q9Y5R8 145 aa6.88□□□□□ -1.31
VPS28-204ENST00000526054 LINC01556Q5JQF7 62 aa6.87□□□□□ -1.31
VPS28-204ENST00000526054 TMEM136Q6ZRR5 245 aa6.87□□□□□ -1.31
VPS28-204ENST00000526054 AMN1Q8IY45 258 aa6.87□□□□□ -1.31
VPS28-204ENST00000526054 MRPL18Q9H0U6 180 aaKnown RBP6.87□□□□□ -1.31
VPS28-204ENST00000526054 TRBV6-8A0A0A6YYG3 113 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 C1orf196B1AJZ1 125 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 PPP1R17O96001 155 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 APCSP02743 223 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 RAB4AP20338 218 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 FAM104BQ5XKR9 115 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 Q6ZRN7 208 aaPredicted RBP6.86□□□□□ -1.31
VPS28-204ENST00000526054 RPL39LQ96EH5 51 aaKnown RBP6.86□□□□□ -1.31
VPS28-204ENST00000526054 RNF185Q96GF1 192 aa6.86□□□□□ -1.31
VPS28-204ENST00000526054 FAT1Q14517 4588 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 TRBV25-1A0A075B6N4 114 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 EREGO14944 169 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 TRGC2P03986 189 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 PKIAP61925 76 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 FABP9Q0Z7S8 132 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 COTL1Q14019 142 aa6.85□□□□□ -1.31
VPS28-204ENST00000526054 IGHV1-24A0A0C4DH33 117 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 TRBV6-5A0A0K0K1A5 114 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 NCR2O95944 276 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 IGHV3-30P01768 117 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 IGHV3-33P01772 117 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 IGHV3-30-3P0DP02 117 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 IGHV3-30-5P0DP03 117 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 RAB5BP61020 215 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 MRPL51Q4U2R6 128 aaKnown RBP6.84□□□□□ -1.31
VPS28-204ENST00000526054 CDPF1Q6NVV7 123 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 NIT1Q86X76 327 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 CHCHD5Q9BSY4 110 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 CHCHD7Q9BUK0 85 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 ST20Q9HBF5 79 aa6.84□□□□□ -1.31
VPS28-204ENST00000526054 A0A087WX48 190 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 SDHAF1A6NFY7 115 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 EPM2AB3EWF7 344 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 CKS2P33552 79 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 FUSP35637 526 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS28-204ENST00000526054 IQCJQ1A5X6 159 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 NFE4Q86UQ8 179 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 PGPEP1Q9NXJ5 209 aa6.83□□□□□ -1.32
VPS28-204ENST00000526054 TMEM262E9PQX1 116 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 SMKR1H3BMG3 65 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 I3L3M4 83 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 GAS8-AS1O95177 125 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 PPBPP02775 128 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 PMCHP20382 165 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 AMTP48728 403 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 LAGE3Q14657 143 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 NTM-AS1Q6ZSK4 140 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 TMEM243Q9BU79 118 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 TMEM70Q9BUB7 260 aa6.82□□□□□ -1.32
VPS28-204ENST00000526054 TMA7Q9Y2S6 64 aaKnown RBP6.82□□□□□ -1.32
VPS28-204ENST00000526054 IBA57-AS1B1ANH7 110 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 D6R8Y8 96 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 PHOX2AO14813 284 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 UBE2L6O14933 153 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 SUMO2P61956 95 aaKnown RBP6.81□□□□□ -1.32
VPS28-204ENST00000526054 KIAA1644Q3SXP7 199 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 ORMDL3Q8N138 153 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 NRACQ8N912 160 aa6.81□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BKO60814 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BJP06899 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BOP23527 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BBP33778 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 POLR2KP53803 58 aaKnown RBP6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BDP58876 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BCP62807 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 GAGE6Q13070 117 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST2H2BEQ16778 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.8□□□□□ -1.32
VPS28-204ENST00000526054 Q8N3U1 123 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BHQ93079 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BNQ99877 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 HIST1H2BMQ99879 126 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 C20orf78Q9BR46 151 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 ALKBH7Q9BT30 221 aaPredicted RBP6.8□□□□□ -1.32
VPS28-204ENST00000526054 VPS13BQ7Z7G8 4022 aa6.8□□□□□ -1.32
VPS28-204ENST00000526054 A0A087WTM6 91 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 TRAV8-3A0A0A6YYJ7 113 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 TRBV27A0A0K0K1C4 114 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 VCYO14598 125 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 TNFRSF6BO95407 300 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 CRPP02741 224 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 FCER1GP30273 86 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 MPV17L2Q567V2 206 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 DEFB104AQ8WTQ1 72 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 PRELID3AQ96N28 172 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 KIR2DL4Q99706 377 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 Q9HAA7 133 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 KLK12Q9UKR0 248 aa6.79□□□□□ -1.32
VPS28-204ENST00000526054 LAMTOR2Q9Y2Q5 125 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms