RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PMCH	P20382	165 aa		14.06	□□□□□ -0.16
CD44-222	ENST00000526025	PRELID3A	Q96N28	172 aa		14.06	□□□□□ -0.16
CD44-222	ENST00000526025	CHCHD5	Q9BSY4	110 aa		14.06	□□□□□ -0.16
CD44-222	ENST00000526025	TMEM243	Q9BU79	118 aa		14.06	□□□□□ -0.16
CD44-222	ENST00000526025	APCS	P02743	223 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	AMT	P48728	403 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	LAGE3	Q14657	143 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	C1orf134	Q5TEV5	83 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	YPEL4	Q96NS1	127 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	SMCO4	Q9NRQ5	59 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	FRAS1	Q86XX4	4008 aa		14.05	□□□□□ -0.16
CD44-222	ENST00000526025	DNAH2	Q9P225	4427 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025		A0A087WX48	190 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	PRSS47	A8MTI9	375 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025		H7C423	109 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	TCAP	O15273	167 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	NPY	P01303	97 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	C6orf223	Q8N319	242 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	DNAH10	Q8IVF4	4471 aa		14.04	□□□□□ -0.16
CD44-222	ENST00000526025	TGIF2-C20orf24	A0A0A6YYL0	155 aa		14.03	□□□□□ -0.16
CD44-222	ENST00000526025	IBA57-AS1	B1ANH7	110 aa		14.03	□□□□□ -0.16
CD44-222	ENST00000526025	TSHB	P01222	138 aa		14.03	□□□□□ -0.16
CD44-222	ENST00000526025	KIR2DL4	Q99706	377 aa		14.03	□□□□□ -0.16
CD44-222	ENST00000526025	SMIM2	Q9BVW6	85 aa		14.03	□□□□□ -0.16
CD44-222	ENST00000526025	IGHV3-30	P01768	117 aa		14.02	□□□□□ -0.17
CD44-222	ENST00000526025	IGHV3-33	P01772	117 aa		14.02	□□□□□ -0.17
CD44-222	ENST00000526025	IGHV3-30-3	P0DP02	117 aa		14.02	□□□□□ -0.17
CD44-222	ENST00000526025	IGHV3-30-5	P0DP03	117 aa		14.02	□□□□□ -0.17
CD44-222	ENST00000526025		A0A1B0GUV1	79 aa		14.01	□□□□□ -0.17
CD44-222	ENST00000526025	TMEM262	E9PQX1	116 aa		14.01	□□□□□ -0.17
CD44-222	ENST00000526025	ESD	P10768	282 aa		14.01	□□□□□ -0.17
CD44-222	ENST00000526025	NFE4	Q86UQ8	179 aa		14.01	□□□□□ -0.17
CD44-222	ENST00000526025	MPV17L2	Q567V2	206 aa		14	□□□□□ -0.17
CD44-222	ENST00000526025		Q8N3U1	123 aa		14	□□□□□ -0.17
CD44-222	ENST00000526025	UBE2L6	O14933	153 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	GAGE6	Q13070	117 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	LINC00336	Q6ZUF6	198 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	CBLN2	Q8IUK8	224 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	MRPL18	Q9H0U6	180 aa	Known RBP	13.99	□□□□□ -0.17
CD44-222	ENST00000526025	MAP1LC3A	Q9H492	121 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	DNAH17	Q9UFH2	4485 aa		13.99	□□□□□ -0.17
CD44-222	ENST00000526025	RTL8C	O15255	209 aa		13.98	□□□□□ -0.17
CD44-222	ENST00000526025	FCER1G	P30273	86 aa		13.98	□□□□□ -0.17
CD44-222	ENST00000526025	RBX1	P62877	108 aa		13.98	□□□□□ -0.17
CD44-222	ENST00000526025	TRAV8-3	A0A0A6YYJ7	113 aa		13.97	□□□□□ -0.17
CD44-222	ENST00000526025		K7EMI3	77 aa		13.96	□□□□□ -0.17
CD44-222	ENST00000526025		Q6ZRN7	208 aa	Predicted RBP	13.96	□□□□□ -0.17
CD44-222	ENST00000526025	DEFB104A	Q8WTQ1	72 aa		13.96	□□□□□ -0.17
CD44-222	ENST00000526025	TRAPPC1	Q9Y5R8	145 aa		13.96	□□□□□ -0.17
CD44-222	ENST00000526025	ZNF25	P17030	456 aa	Predicted RBP	13.95	□□□□□ -0.18
CD44-222	ENST00000526025	FABP9	Q0Z7S8	132 aa		13.95	□□□□□ -0.18
CD44-222	ENST00000526025	KIAA1644	Q3SXP7	199 aa		13.95	□□□□□ -0.18
CD44-222	ENST00000526025		Q8N8P6	123 aa		13.95	□□□□□ -0.18
CD44-222	ENST00000526025	ALKBH7	Q9BT30	221 aa	Predicted RBP	13.95	□□□□□ -0.18
CD44-222	ENST00000526025	KLK12	Q9UKR0	248 aa		13.95	□□□□□ -0.18
CD44-222	ENST00000526025	SMAGP	Q0VAQ4	97 aa		13.94	□□□□□ -0.18
CD44-222	ENST00000526025		Q0VG73	95 aa		13.94	□□□□□ -0.18
CD44-222	ENST00000526025	MRPL52	Q86TS9	123 aa	Known RBP	13.94	□□□□□ -0.18
CD44-222	ENST00000526025		Q8N976	141 aa		13.94	□□□□□ -0.18
CD44-222	ENST00000526025	NXT2	Q9NPJ8	142 aa	Known RBP	13.94	□□□□□ -0.18
CD44-222	ENST00000526025	ANG	P03950	147 aa	Known RBP	13.93	□□□□□ -0.18
CD44-222	ENST00000526025	TMEM18	Q96B42	140 aa		13.93	□□□□□ -0.18
CD44-222	ENST00000526025	PRR34	Q9NV39	138 aa		13.93	□□□□□ -0.18
CD44-222	ENST00000526025	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	13.92	□□□□□ -0.18
CD44-222	ENST00000526025	IGKV2-29	A2NJV5	120 aa	Predicted RBP	13.92	□□□□□ -0.18
CD44-222	ENST00000526025	FGF6	P10767	208 aa		13.92	□□□□□ -0.18
CD44-222	ENST00000526025	RAB5A	P20339	215 aa		13.92	□□□□□ -0.18
CD44-222	ENST00000526025	AMMECR1L	Q6DCA0	310 aa		13.92	□□□□□ -0.18
CD44-222	ENST00000526025	C20orf203	Q8NBC4	194 aa		13.92	□□□□□ -0.18
CD44-222	ENST00000526025	FAT2	Q9NYQ8	4349 aa		13.92	□□□□□ -0.18
CD44-222	ENST00000526025	RMI2	Q96E14	147 aa		13.91	□□□□□ -0.18
CD44-222	ENST00000526025	TM2D2	Q9BX73	214 aa		13.91	□□□□□ -0.18
CD44-222	ENST00000526025	CSDC2	Q9Y534	153 aa	Known RBP	13.91	□□□□□ -0.18
CD44-222	ENST00000526025	COX11	Q9Y6N1	276 aa		13.91	□□□□□ -0.18
CD44-222	ENST00000526025	IGLV4-60	A0A075B6I1	120 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	LOC389332	A0A1B0GUA5	103 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	CRP	P02741	224 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	MIA	Q16674	131 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	UBE2W	Q96B02	151 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	TIMM21	Q9BVV7	248 aa		13.9	□□□□□ -0.18
CD44-222	ENST00000526025	S100A1	P23297	94 aa		13.89	□□□□□ -0.19
CD44-222	ENST00000526025	ENHO	Q6UWT2	76 aa		13.89	□□□□□ -0.19
CD44-222	ENST00000526025	TMEM101	Q96IK0	257 aa		13.89	□□□□□ -0.19
CD44-222	ENST00000526025		Q9HAA7	133 aa		13.89	□□□□□ -0.19
CD44-222	ENST00000526025	PRSS29P	A6NIE9	313 aa		13.88	□□□□□ -0.19
CD44-222	ENST00000526025	ORMDL2	Q53FV1	153 aa		13.88	□□□□□ -0.19
CD44-222	ENST00000526025	RNASEK	Q6P5S7	137 aa	Known RBP	13.88	□□□□□ -0.19
CD44-222	ENST00000526025	LINC00269	Q8N2A0	174 aa		13.88	□□□□□ -0.19
CD44-222	ENST00000526025	LINC01546	A6NGU7	62 aa		13.87	□□□□□ -0.19
CD44-222	ENST00000526025	COLCA2	A8K830	154 aa		13.87	□□□□□ -0.19
CD44-222	ENST00000526025	IFI27	P40305	119 aa	Predicted RBP	13.87	□□□□□ -0.19
CD44-222	ENST00000526025	REG3A	Q06141	175 aa		13.87	□□□□□ -0.19
CD44-222	ENST00000526025	OR5A1	Q8NGJ0	315 aa		13.87	□□□□□ -0.19
CD44-222	ENST00000526025	UBE2D4	Q9Y2X8	147 aa		13.87	□□□□□ -0.19
CD44-222	ENST00000526025	TRAV8-4	A0A0B4J246	113 aa		13.85	□□□□□ -0.19
CD44-222	ENST00000526025	G0S2	P27469	103 aa		13.85	□□□□□ -0.19
CD44-222	ENST00000526025	PRSS3P2	Q8NHM4	247 aa		13.85	□□□□□ -0.19
CD44-222	ENST00000526025	SPANXA1	Q9NS26	97 aa		13.85	□□□□□ -0.19
CD44-222	ENST00000526025	TNP2	Q05952	138 aa		13.84	□□□□□ -0.19
CD44-222	ENST00000526025	DGAT2L7P	Q6IED9	249 aa		13.84	□□□□□ -0.19

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