RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 COTL1Q14019 142 aa19.39■□□□□ 0.69
SYNPO-203ENST00000518872 C20orf203Q8NBC4 194 aa19.39■□□□□ 0.69
SYNPO-203ENST00000518872 GFRA4Q9GZZ7 299 aa19.39■□□□□ 0.69
SYNPO-203ENST00000518872 FAM231BA6NCW3 169 aa19.38■□□□□ 0.69
SYNPO-203ENST00000518872 FAM229AH3BQW9 127 aa19.38■□□□□ 0.69
SYNPO-203ENST00000518872 OSTCQ9NRP0 149 aa19.38■□□□□ 0.69
SYNPO-203ENST00000518872 REG3AQ06141 175 aa19.37■□□□□ 0.69
SYNPO-203ENST00000518872 SRRM2Q9UQ35 2752 aaKnown RBP19.36■□□□□ 0.69
SYNPO-203ENST00000518872 TRAV26-2A0A0B4J265 109 aa19.36■□□□□ 0.69
SYNPO-203ENST00000518872 INAFM2P0DMQ5 153 aa19.36■□□□□ 0.69
SYNPO-203ENST00000518872 CLPSL2Q6UWE3 100 aa19.36■□□□□ 0.69
SYNPO-203ENST00000518872 TSKUQ8WUA8 353 aa19.36■□□□□ 0.69
SYNPO-203ENST00000518872 TRAV8-4A0A0B4J246 113 aa19.35■□□□□ 0.69
SYNPO-203ENST00000518872 USP17L23D6RBM5 183 aa19.35■□□□□ 0.69
SYNPO-203ENST00000518872 HLA-DQA1P01909 254 aa19.35■□□□□ 0.69
SYNPO-203ENST00000518872 AMTP48728 403 aa19.35■□□□□ 0.69
SYNPO-203ENST00000518872 NCR2O95944 276 aa19.34■□□□□ 0.69
SYNPO-203ENST00000518872 IGLV4-60A0A075B6I1 120 aa19.33■□□□□ 0.68
SYNPO-203ENST00000518872 LINC01620Q4KN68 170 aa19.33■□□□□ 0.68
SYNPO-203ENST00000518872 BORCS7Q96B45 105 aa19.33■□□□□ 0.68
SYNPO-203ENST00000518872 A0A1B0GUT8 65 aa19.32■□□□□ 0.68
SYNPO-203ENST00000518872 HIGD1CA8MV81 97 aa19.32■□□□□ 0.68
SYNPO-203ENST00000518872 UBE2L6O14933 153 aa19.32■□□□□ 0.68
SYNPO-203ENST00000518872 FAM74A3Q4VXF1 159 aa19.32■□□□□ 0.68
SYNPO-203ENST00000518872 RPL39LQ96EH5 51 aaKnown RBP19.32■□□□□ 0.68
SYNPO-203ENST00000518872 TRBV6-5A0A0K0K1A5 114 aa19.3■□□□□ 0.68
SYNPO-203ENST00000518872 TMEM191AQ9H0A3 160 aa19.3■□□□□ 0.68
SYNPO-203ENST00000518872 FLG2Q5D862 2391 aaPredicted RBP19.29■□□□□ 0.68
SYNPO-203ENST00000518872 DGAT2L7PQ6IED9 249 aa19.29■□□□□ 0.68
SYNPO-203ENST00000518872 SDHAF1A6NFY7 115 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 H7C423 109 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 PRSS1P07477 247 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 DEFB104AQ8WTQ1 72 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 ISOC2Q96AB3 205 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 V9GYV3 84 aa19.28■□□□□ 0.68
SYNPO-203ENST00000518872 TMEM241Q24JQ0 296 aa19.27■□□□□ 0.68
SYNPO-203ENST00000518872 SCXQ7RTU7 201 aa19.27■□□□□ 0.68
SYNPO-203ENST00000518872 CLRN3Q8NCR9 226 aa19.27■□□□□ 0.68
SYNPO-203ENST00000518872 CHAC1Q9BUX1 264 aa19.27■□□□□ 0.68
SYNPO-203ENST00000518872 SMDT1Q9H4I9 107 aa19.27■□□□□ 0.68
SYNPO-203ENST00000518872 IGLV10-54A0A075B6I4 117 aa19.25■□□□□ 0.67
SYNPO-203ENST00000518872 DMBT1Q9UGM3 2413 aaPredicted RBP19.24■□□□□ 0.67
SYNPO-203ENST00000518872 APCSP02743 223 aa19.24■□□□□ 0.67
SYNPO-203ENST00000518872 RPL23P62829 140 aaKnown RBP19.24■□□□□ 0.67
SYNPO-203ENST00000518872 I3L3M4 83 aa19.23■□□□□ 0.67
SYNPO-203ENST00000518872 C9orf163Q8N9P6 203 aa19.23■□□□□ 0.67
SYNPO-203ENST00000518872 RNF185Q96GF1 192 aa19.23■□□□□ 0.67
SYNPO-203ENST00000518872 C9JQL5 133 aa19.22■□□□□ 0.67
SYNPO-203ENST00000518872 LINC00528Q8N1L1 170 aa19.22■□□□□ 0.67
SYNPO-203ENST00000518872 NUP35Q8NFH5 326 aa19.22■□□□□ 0.67
SYNPO-203ENST00000518872 MRAP2Q96G30 205 aa19.22■□□□□ 0.67
SYNPO-203ENST00000518872 NAT8Q9UHE5 227 aa19.22■□□□□ 0.67
SYNPO-203ENST00000518872 PLA2G1BP04054 148 aaKnown RBP19.21■□□□□ 0.67
SYNPO-203ENST00000518872 RAB4AP20338 218 aa19.21■□□□□ 0.67
SYNPO-203ENST00000518872 RIGQ13278 110 aa19.21■□□□□ 0.67
SYNPO-203ENST00000518872 PEA15Q15121 130 aa19.21■□□□□ 0.67
SYNPO-203ENST00000518872 ST20Q9HBF5 79 aa19.2■□□□□ 0.66
SYNPO-203ENST00000518872 MYCBP2O75592 4640 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 GAS8-AS1O95177 125 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 ZNF25P17030 456 aaPredicted RBP19.19■□□□□ 0.66
SYNPO-203ENST00000518872 PMCHP20382 165 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 AMMECR1LQ6DCA0 310 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 CIRBP-AS1Q8TBR5 109 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 NAT8BQ9UHF3 227 aa19.19■□□□□ 0.66
SYNPO-203ENST00000518872 POLR2KP53803 58 aaKnown RBP19.18■□□□□ 0.66
SYNPO-203ENST00000518872 CNBPP62633 177 aaKnown RBP19.18■□□□□ 0.66
SYNPO-203ENST00000518872 SRSF3P84103 164 aaKnown RBP19.18■□□□□ 0.66
SYNPO-203ENST00000518872 IGKV2D-29A0A075B6S2 120 aaPredicted RBP19.17■□□□□ 0.66
SYNPO-203ENST00000518872 IGKV2-29A2NJV5 120 aaPredicted RBP19.17■□□□□ 0.66
SYNPO-203ENST00000518872 FGF6P10767 208 aa19.17■□□□□ 0.66
SYNPO-203ENST00000518872 ESDP10768 282 aa19.17■□□□□ 0.66
SYNPO-203ENST00000518872 ADIRFQ15847 76 aa19.17■□□□□ 0.66
SYNPO-203ENST00000518872 AMN1Q8IY45 258 aa19.17■□□□□ 0.66
SYNPO-203ENST00000518872 TRBV27A0A0K0K1C4 114 aa19.16■□□□□ 0.66
SYNPO-203ENST00000518872 SMIM27A0A1W2PRY6 76 aa19.15■□□□□ 0.66
SYNPO-203ENST00000518872 TSHBP01222 138 aa19.15■□□□□ 0.66
SYNPO-203ENST00000518872 RPS10P46783 165 aaKnown RBP19.15■□□□□ 0.66
SYNPO-203ENST00000518872 RNASEKQ6P5S7 137 aaKnown RBP19.14■□□□□ 0.65
SYNPO-203ENST00000518872 PPP1R17O96001 155 aa19.13■□□□□ 0.65
SYNPO-203ENST00000518872 hDV102S1A0JD36 115 aa19.12■□□□□ 0.65
SYNPO-203ENST00000518872 TMEM242Q9NWH2 141 aa19.12■□□□□ 0.65
SYNPO-203ENST00000518872 SDIM1Q6ZPB5 146 aa19.11■□□□□ 0.65
SYNPO-203ENST00000518872 GAGE12HA6NDE8 117 aa19.1■□□□□ 0.65
SYNPO-203ENST00000518872 MRPL52Q86TS9 123 aaKnown RBP19.1■□□□□ 0.65
SYNPO-203ENST00000518872 OR5A1Q8NGJ0 315 aa19.1■□□□□ 0.65
SYNPO-203ENST00000518872 BTF3L4Q96K17 158 aa19.1■□□□□ 0.65
SYNPO-203ENST00000518872 AP5S1Q9NUS5 200 aa19.1■□□□□ 0.65
SYNPO-203ENST00000518872 A0A1B0GW15 77 aa19.09■□□□□ 0.65
SYNPO-203ENST00000518872 CFAP161Q6P656 301 aa19.09■□□□□ 0.65
SYNPO-203ENST00000518872 C15orf56Q8N910 161 aa19.09■□□□□ 0.65
SYNPO-203ENST00000518872 NRACQ8N912 160 aa19.09■□□□□ 0.65
SYNPO-203ENST00000518872 CHCHD10Q8WYQ3 142 aaPredicted RBP19.09■□□□□ 0.65
SYNPO-203ENST00000518872 IGKV3OR2-268A0A0C4DH90 116 aa19.08■□□□□ 0.64
SYNPO-203ENST00000518872 FAM104BQ5XKR9 115 aa19.08■□□□□ 0.64
SYNPO-203ENST00000518872 TMEM101Q96IK0 257 aa19.08■□□□□ 0.64
SYNPO-203ENST00000518872 TRAV16A0A0A6YYK6 109 aaPredicted RBP19.07■□□□□ 0.64
SYNPO-203ENST00000518872 VCYO14598 125 aa19.07■□□□□ 0.64
SYNPO-203ENST00000518872 C7orf77A4D0Y5 90 aa19.06■□□□□ 0.64
SYNPO-203ENST00000518872 SLPIP03973 132 aa19.06■□□□□ 0.64
SYNPO-203ENST00000518872 KRTAP10-4P60372 401 aaPredicted RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms